RNA id: TU320559


Basic Information

Item Value
RNA id TU320559
length 1818
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G282634
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61841813 ~ 61843829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataaatatatttcatatttgagattcttcaaagtagccatcctttgcctttgacagctttgtacactcttggcattctctcaaccagcttcacctggaatgcttgtccaacagtcttgaaggaattcccacatatgctgagcacttgtttccttcactctgtggtccaactcctcccaaaccatctcaattgggttgaggtcgggtgattgtggaggccaggtcatctgatgcagcactccatcactctctttggtcaaatagcccttacacaggctgtaggtgtattttgggtcattgtcctgttgaaaaacaaatgatagtcccactaattgcaaaccagatgggatggcgtatcgctgcaggatgccctggtagccatgctggttaagtgtgcctttaattctaaataaatcattgacagtgtcaccagcaaagcaccatcatacctcctcctccatgcttcacagtgggaaccacacatgcagagatactctgcgtctcacaaagacatgacgggtggaaccaaaactctcaaatttggactcatcaaaccaaaggacagatttccactagactaatgtccattgctcgtgtttcttggcccaagcaagtctctcctttattattggtgtcctttagtagtggtttctttgcagcaatccgaccatgaaggcctgatttacgcagttacttgaactctgtgaagcatttatttgggctgcaatttctgagactggtaactctaatgaacgtatcctctgcagcagaggtaactctgggtcttcctttcctttggcagtcctcatgagagccagtttcctcatCGCGATTGATGGTTTTTCAGACTgcagttgaagaaactttaaaagttatttacattttccgtattgactgaccttcatgtcttaaagtaacaatggactgttgtttctctttgcttatttgagctgttcttgccacaatatggactgggtcttttaccaaatagagctatcttctgtataccacccctaccttgtcacaacacaactgattttctaaaatgcattaagaaggacatAAATTAAATTTTAAGAAggcactctggaatgagtaggtgtgtccaaacctttgactggtactgtatatagtgcactacttttgaccagagcccggtGAATGGGTTGCAATTTTGGAAGCACAATTATCAGAAGCACTCTAAAgtaaaaatatctatatttatctaGCAGCTAGACTGCACATTGGATGAAGTGGATGTCTGTCTTTAAGATACCAAACTGCATTAATATGATGGGGTGCTCTGTTAAGCTTTATTTCCTTCAAAGGAAACACAAATGAGTTGTAATCTGGCTACAGCTGCAATGAATGTTCACCTACAAAATGATTAAACACATTTCAAAGGAGAAAAAGGAacaagagaggaaagagggtatATTTTTGGAGTATGCAAAGAAACGGCAGAATAATCCTAGAGGACAGAGTATATCATGTAATTGATGACAACATTGAGATATTGAAATaatgattggtttacatgtaatctctctctcacaaaaAGTTTGAATTGCTTGCTTATGTTTCACATGCTTAGTAGCTCAGATGTAGCAAGATGATTTACAAAGCGTCTTTCTTACAGACGTTTTTGGTGCTTTGGGTTTTTCTAAACTGAACTGTTGATCTATACATCACTGGTTTGACGTCATACACAACATACAAACATATATCAATCTATGAAATGCTAACGACCTTTCAATTGTGATTGTAAATCTGGTTTCAGTGTTTTATTAAACATTGTCTGGCTGGTGTCATGACCAAC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320481 lncRNA upstream 143430 61693535 ~ 61698383 (+) True G282560
TU320459 lncRNA upstream 187616 61653550 ~ 61654197 (+) True G282538
TU320399 lncRNA upstream 272680 61568709 ~ 61569133 (+) True G282486
TU320397 lncRNA upstream 276463 61564123 ~ 61565350 (+) True G282484
TU320394 lncRNA upstream 278081 61563464 ~ 61563732 (+) True G282483
TU320587 lncRNA downstream 1461 61845290 ~ 61849674 (+) True G282658
TU320640 lncRNA downstream 113559 61957388 ~ 61964066 (+) False G282707
TU320646 lncRNA downstream 138242 61982071 ~ 61982481 (+) True G282712
TU320677 lncRNA downstream 158838 62002667 ~ 62003022 (+) True G282725
TU320695 lncRNA downstream 269231 62113060 ~ 62161959 (+) False G282743
XM_021597566.2 mRNA upstream 607 61836665 ~ 61841206 (+) False LOC110520325
XM_021597567.2 mRNA upstream 607 61836666 ~ 61841206 (+) False LOC110520325
XM_021597568.2 mRNA upstream 607 61836666 ~ 61841206 (+) True LOC110520325
XM_021597565.2 mRNA upstream 9400 61773433 ~ 61832413 (+) False LOC110520324
XM_036974833.1 mRNA upstream 9400 61773433 ~ 61832413 (+) False LOC110520324
XM_021597580.2 mRNA downstream 277370 62121199 ~ 62125952 (+) False LOC110520332
XM_036974864.1 mRNA downstream 277381 62121210 ~ 62125952 (+) False LOC110520332
XM_021597579.2 mRNA downstream 277389 62121218 ~ 62126483 (+) False LOC110520332
XM_036974863.1 mRNA downstream 285205 62129034 ~ 62156042 (+) False LOC110520333
XM_021597581.2 mRNA downstream 287020 62130849 ~ 62156042 (+) False LOC110520333
TU319833 other upstream 804708 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 948035 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 948035 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 1084463 60740239 ~ 60757350 (+) True G281591
TU318844 other upstream 1551246 60287388 ~ 60290567 (+) True G281141
TU320641 other downstream 113559 61957388 ~ 61961475 (+) True G282707
TU320785 other downstream 349775 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 523785 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 862502 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 1172497 63016326 ~ 63022591 (+) True G284313

Expression Profile