RNA id: TU320587



Basic Information


Item Value
RNA id TU320587
length 343
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G282658
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61845290 ~ 61849674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaaaacctgatggagtctgcaaaagacctgagactgggacagagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU320559 lncRNA upstream 1461 61841813 ~ 61843829 (+) True G282634
TU320481 lncRNA upstream 146907 61693535 ~ 61698383 (+) True G282560
TU320459 lncRNA upstream 191093 61653550 ~ 61654197 (+) True G282538
TU320399 lncRNA upstream 276157 61568709 ~ 61569133 (+) True G282486
TU320397 lncRNA upstream 279940 61564123 ~ 61565350 (+) True G282484
TU320640 lncRNA downstream 107714 61957388 ~ 61964066 (+) False G282707
TU320646 lncRNA downstream 132397 61982071 ~ 61982481 (+) True G282712
TU320677 lncRNA downstream 152993 62002667 ~ 62003022 (+) True G282725
TU320695 lncRNA downstream 263386 62113060 ~ 62161959 (+) False G282743
TU320696 lncRNA downstream 263632 62113306 ~ 62161959 (+) True G282743
XM_021597566.2 mRNA upstream 4084 61836665 ~ 61841206 (+) False LOC110520325
XM_021597567.2 mRNA upstream 4084 61836666 ~ 61841206 (+) False LOC110520325
XM_021597568.2 mRNA upstream 4084 61836666 ~ 61841206 (+) True LOC110520325
XM_036974832.1 mRNA upstream 12877 61773435 ~ 61832413 (+) False LOC110520324
XM_021597580.2 mRNA downstream 271525 62121199 ~ 62125952 (+) False LOC110520332
XM_036974864.1 mRNA downstream 271536 62121210 ~ 62125952 (+) False LOC110520332
XM_021597579.2 mRNA downstream 271544 62121218 ~ 62126483 (+) False LOC110520332
XM_036974863.1 mRNA downstream 279360 62129034 ~ 62156042 (+) False LOC110520333
XM_021597581.2 mRNA downstream 281175 62130849 ~ 62156042 (+) False LOC110520333
TU319833 other upstream 808185 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 951512 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 951512 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 1087940 60740239 ~ 60757350 (+) True G281591
TU318844 other upstream 1554723 60287388 ~ 60290567 (+) True G281141
TU320641 other downstream 107714 61957388 ~ 61961475 (+) True G282707
TU320785 other downstream 343930 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 517940 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 856657 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 1166652 63016326 ~ 63022591 (+) True G284313

Expression Profile