RNA id: TU320641


Basic Information

Item Value
RNA id TU320641
length 2691
RNA type TUCP
GC content 0.45
exon number 8
gene id G282707
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61957388 ~ 61964066 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttttgatattcattcaaaaatatgtttaataacaataatacattgTATACATTCTGTTTAAAGTAAGTCAACTTTTGTATACACTGTGtaacaaaacaacagaaaaataGCCATCGAGATCACTTGAGAGGTGTTTATGTGGAGCTAAAAGTAGAGCTAAAAGTGCTGTTCTGTCGAGCCAGGAAGTAGTCAGCCTTTCCTCTGGGTTTTAGGAGGAGGTAAAGGAAGATGGAGACCACAGTCAGGAAACAAACAGACCCTGCTACACCCACCATCAGCCATGTGGACCTGGGgtCTTCGACTCTGAACTGTGCAATGacctcctgtcttcctccctgGTTTTGAGTGACACACTTCAGCTCCGCCCTTGTATCCTCATCACACAGCTCAATGATGTACAGATTCACCTCAACATAACAACCCCCAGCCACTGTGGTTACCCTCCTCTGACTCATCAGAGCCCGTCCACCAAGGTTGGACGAATCCAATGAATGGCCGTCCACCAACCATGTGACCATTGTGGCGTCCGCTGATTGGCTCCCTGTGAAAACCTGGCAGGATATCTCCAAAACAGAGCCCAATGGACTTTCAAAGATTGTTCCATTGGCAGGAGACACAATCTTGGGGGACACAACTGCTGGGGATTCCACAGTGCTGAgaccagggttaggggttagggttgtgtcTGGGTCAAAGATGGGCCTGGTGGTCTGAATGTAGGGAACTGGGTCAGGCACTTTTACATTGAGGTTAATGGTCCTGCTGACTGTGTACTGGAGGTTGTTGACGTGGACTCTAAGCTGACAGGTGTAGAGGCCCTGGTCTGCTGGCCTCACGTCTGAGATGAGGATCACATCTTGTCTCTGTCTTTGGTAGCGACCACTGCCAACAGGAAGCACTGTCGGGCTGGAGTCCTTATACCACTCTATTTCGTCAGTCCTGTTGAAGTCCTTTAAATGAGGACATCTGATTGACAATTTTTTTCCCACGGGTGTAGAGATGGGATAAGACAACTTCTCAATATCAGTTTGCTTGGTCTCATAAACTTGTAGAGTGAAGCTTCCAATTACACATAATGTGTCATTTCTGTAGATGCAGGAGTACGCTCCGGAGTCAGACGTTCGAGCTGGGAGGAGCCACAGCTGTCGCTCACGCTGCAGGACCCGCCCCTCTTTCCCCTCGTCAGGGTCAATGCCCTCCGTCCCATTTCCCTTGGCGATGACATAGGTGTAACCCGCCTTGGCCTGGGAGAATCGTCTGTAGAGGACCCTGTCAAACACAACGCAGCTAAGGACCACCGCTTCACCCTGCACACGGAACACCTCCGGCTCTGGAGACACCCTGAAACAGCCATCTGGGGAAACACATCAGTTACCATCAATAaatgtatacatacagtgccttcggaaagtattcagaccccttgactttttccggtttctttgcaatttctcgcatggaatagccttaatttctcagaacaagattaGACTGACAagattcagaagaaagtcctttgtttctggccattttgagcctgtaatcgaacccacaaatactgatgctacacatactcaactagtctaaagaaggccagttttattgcttgttTAATCAagacaacaattttcagctgtgctaacaaaattgcaaggattttctaatgatcaattagccttttaaaatgaaaaacttggattagctaacacaacgtgccattggaacacaggagtgatggttgctgataatgggcctctgtatgcctatatagatttccattttttttttttatcagccatttccagctacaatagtcacttacaacattaacaatgtctacactgtatttctgatcaattcgatgttattttaatggacaaaaaatagtGCTTTCCTTTCAaagacaaggacatttctaagtgaacccaaacttttgaacggtagtatttaaaaaaaagaaaaaagaaatcccttatttacataagtattcagacccttttctaatAGACTCAAAACTGAGCTCATGTGCattttgtttccattgatcatccttgagatgtttctacaacttcattggagttcatctgtggtaaattcaattaaattgacattatttggaaaggcacacactatataaggtcccacagatgacagtgcatatcagagcaaaaaccaagctatgaggtcgaaggaattgtccttagagctccgagacaggattgtgttgaggcacagatctggggaagggtaccaaaacatttctgcagcattgaaggtcaccaagaacacagtggcctccatcattcttaaattgaagaagtttggaaccaccaacactcttccaagtcatgacagcctgcttggagtttgccaaaaggcacctaaagactttcagaccatgagaaacaagattctctggtctgatgaaaccaagattttggccaaaatgccaagcgtcacatctggaggaaacctggcatcatccttACGGcgcagcatggtggtggcagcatcacgcatTGGGGATTttcttcagcagcagggactggaagactagtcaggatcgagacaaagatcaacggaacaaagtacagacagatccttgaAAACCTGAACGCTCAGAACCTCAGATtaggggcgaaggttcaccttccaacaggacaagcacacagccaagacaaagcaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320587 lncRNA upstream 107714 61845290 ~ 61849674 (+) True G282658
TU320559 lncRNA upstream 113559 61841813 ~ 61843829 (+) True G282634
TU320481 lncRNA upstream 259005 61693535 ~ 61698383 (+) True G282560
TU320459 lncRNA upstream 303191 61653550 ~ 61654197 (+) True G282538
TU320399 lncRNA upstream 388255 61568709 ~ 61569133 (+) True G282486
TU320646 lncRNA downstream 20596 61982071 ~ 61982481 (+) True G282712
TU320677 lncRNA downstream 41192 62002667 ~ 62003022 (+) True G282725
TU320695 lncRNA downstream 151585 62113060 ~ 62161959 (+) False G282743
TU320696 lncRNA downstream 151831 62113306 ~ 62161959 (+) True G282743
TU320770 lncRNA downstream 151978 62113453 ~ 62121013 (+) True G282805
XM_021597566.2 mRNA upstream 116182 61836665 ~ 61841206 (+) False LOC110520325
XM_021597567.2 mRNA upstream 116182 61836666 ~ 61841206 (+) False LOC110520325
XM_021597568.2 mRNA upstream 116182 61836666 ~ 61841206 (+) True LOC110520325
XM_021597565.2 mRNA upstream 124975 61773433 ~ 61832413 (+) False LOC110520324
XM_036974833.1 mRNA upstream 124975 61773433 ~ 61832413 (+) False LOC110520324
XM_021597580.2 mRNA downstream 159724 62121199 ~ 62125952 (+) False LOC110520332
XM_036974864.1 mRNA downstream 159735 62121210 ~ 62125952 (+) False LOC110520332
XM_021597579.2 mRNA downstream 159743 62121218 ~ 62126483 (+) False LOC110520332
XM_036974863.1 mRNA downstream 167559 62129034 ~ 62156042 (+) False LOC110520333
XM_021597581.2 mRNA downstream 169374 62130849 ~ 62156042 (+) False LOC110520333
TU319833 other upstream 920283 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 1063610 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 1063610 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 1200038 60740239 ~ 60757350 (+) True G281591
TU318844 other upstream 1666821 60287388 ~ 60290567 (+) True G281141
TU320785 other downstream 232129 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 406139 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 744856 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 1054851 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 1164415 63125890 ~ 63128958 (+) True LOC110520364

Expression Profile