RNA id: TU320751


Basic Information

Item Value
RNA id TU320751
length 1505
lncRNA type read_through
GC content 0.40
exon number 5
gene id G282786
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62126644 ~ 62130112 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATGGTTACACAGATCACAGCGAACACTTTATTTAAAAAACTGTCAACTGTGATTATGGCATGGGTGAATGTCTACTTACATTTAATTTTACAATTAGATGTATACATTTATATTGTCATATTATAAAACGTATATGTAAAAAAGGACAATATTCAACCAAAGGTTCTGTAGAAACCCTATTGAAGAGTGATCTGATTTAGGAGAATGATCACTTAACACGAGATCCTTTAAATCGGGAAGGCATAGAACCGACGGAGCCTCTCTGCGGTAAGCATAGGAAGAGGTGTGCATTTTAATACATCCCCACAGGAGAAAGCCATCCCCATTCAGAGACCGTGGAGCATTAGATGAATGTTATTTGGAGGTTAGGGGGCTAGTTCTCTTCTGAGTCACTGTCTTTCCGTGTGGGGAGAGTGGATCGAATCGACGACATTAGCTTGTCTTCAATCTGCTTCTTGGGGTTTTCTTCCAGGTCTGTCTTGACAGCGCCAGATTCCGATAACCTCCACCACCTCCTTGATGTAGTCCTGCCCAGATATCTCCACTACTTCACCGAAGCAATTCTTTATCTGGGTGGCTTTCCATTCTGCAAGCCTCTTCTGTCTGTACATCTCGATGGCGGCCTCGTCCTCTTCACTGAAGTCATCCTCGTTCTCATCCAGCTCGTCCAGAGTCATGCTCTCATAGGTTTTCAACAGATGACTGCTCAAGAACTATCTGCTTCTCTAGAGCTTCCTCCTCAACCTCATCCTGAGTTCTCTCCTTGGGAGGAAGGACCCCCTTCTTTCTCAGGATGTCATTCCACTCTGTATCTGCATTAGGGTCCTGCATTTTTTTAACCGTTCAAAACAGACGCTGAAAACACCACTGCTCTTCCCAGACACGGAAATAGAAGGACCTCACCCATATTTATTCCGGAGTAAAACAAGATCTTTAATGTGACAAAACTTAAATACTTGTCAGATATCTCAAATATAGAATCGTTACAAaataatttattttctgaggaCAAATCTATTCCATCACCTGTTTTATATGTATTATTATCATAAACCTGGCTAGGGCAAGACATTCAAGGGACAATAATAAAGGTTGCACCAATATCCGGTTTAGGTCCTGTATGTCTATATTAGGAGTGGGAAAGCTGTACTACATTCCATGTGTGGCATCTGATTGAGACAACAGCTGCACCTGAAAATCACACTGCTGTGCTGTCAGTGTCTGGGTTGACCATACATTTATGGGGGTTGCATAGAGGTCCAAACATCTCTGAAAATTGTTGGCCTGTTTTTTGGTGTGTAGATGTGCTTCAATATGATATCCTTAtactgtatttgtttattttcaatGTAGTTATGATGACTATAGCAAGTATAGATGATGCGTTTATGAATCATATACTTAGGTACATGTTCTACTGTGCAAATATATTTTCAAATCCTTTATTATGGGTATGGTTATAAATCTTCATGTCAGTCTTGATCTTGTGAAACTCAATAAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320759 lncRNA upstream 1581 62122795 ~ 62125063 (+) True LOC110520332
TU320770 lncRNA upstream 5631 62113453 ~ 62121013 (+) True G282805
TU320677 lncRNA upstream 123622 62002667 ~ 62003022 (+) True G282725
TU320646 lncRNA upstream 144163 61982071 ~ 61982481 (+) True G282712
TU320640 lncRNA upstream 162578 61957388 ~ 61964066 (+) False G282707
TU320783 lncRNA downstream 34771 62164883 ~ 62174362 (+) False G282815
TU320782 lncRNA downstream 38040 62168152 ~ 62174362 (+) True G282815
TU320790 lncRNA downstream 39634 62169746 ~ 62171892 (+) True G282822
TU320878 lncRNA downstream 173371 62303483 ~ 62320393 (+) True G282907
TU320950 lncRNA downstream 279111 62409223 ~ 62409441 (+) True G282976
XM_021597579.2 mRNA upstream 161 62121218 ~ 62126483 (+) False LOC110520332
XM_021597580.2 mRNA upstream 692 62121199 ~ 62125952 (+) False LOC110520332
XM_036974864.1 mRNA upstream 692 62121210 ~ 62125952 (+) False LOC110520332
XM_021597566.2 mRNA upstream 285438 61836665 ~ 61841206 (+) False LOC110520325
XM_021597567.2 mRNA upstream 285438 61836666 ~ 61841206 (+) False LOC110520325
XM_021597581.2 mRNA downstream 737 62130849 ~ 62156042 (+) False LOC110520333
XM_021597582.2 mRNA downstream 737 62130849 ~ 62156042 (+) False LOC110520333
XM_021597583.2 mRNA downstream 737 62130849 ~ 62156042 (+) True LOC110520333
XM_021597592.2 mRNA downstream 44473 62174585 ~ 62180282 (+) False cnot11
XM_021597593.2 mRNA downstream 44474 62174586 ~ 62180282 (+) True cnot11
TU320641 other upstream 165169 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1089539 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 1232866 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 1232866 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 1369294 60740239 ~ 60757350 (+) True G281591
TU320785 other downstream 63492 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 237502 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 576219 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 886214 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 995778 63125890 ~ 63128958 (+) True LOC110520364

Expression Profile