RNA id: TU321851


Basic Information

Item Value
RNA id TU321851
length 858
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G283817
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62649487 ~ 62650344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgttggaggccactgtgttcttggggaccttcaacgctgcagcaatgttttggtatccttacCCAGATCTgcacctcgacacaatcctgtctcggagctctcgGGATAAttccttggtttttgctctgacatgcactaacAATTGTGgaacctttatatagacaggtgtgtgcattttcaaatcatgtccaatcaagttatgaaaacatctcaaggatgatcaattgaaacaggatgcacctgagctcaattttgagtctcatagcaagggtctgaatacttacactaccgttcaaaagtttggtgtcacttagaattattattattatatatttttttaaagaaaagcacattttttgtccattaaaataacatcatgttgatcagaaatagtgtagccatttttaatggaatatctacataggtgtacagaggcccattatcagcaaccatcactcttgtgttccaatggcacgttgtgttagctaatcctagTTTATACATTTTAagaggctaattgatcattagaaaacccttttgcaattctgttagcacagctgaaaactgttgttctgtttaaagaagcaataaaactggcctttagactcaTTGAGTATGtgtagcatcagcatttgtgtgttcgattacaggctcaaaatggccagaaacaaagcactttcttctgaaacctgTCAGTctcttcttgttctgagaaatgaaggctattccatgcgagaaattgccaacaaactgaagatctcatacaatgctgtgtactactcccttcatagaacagggcaaactggctttagccagaatagaaagaggagtgggaggtgcacaactgagcaagaggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321848 lncRNA upstream 44131 62598750 ~ 62605356 (+) True LOC110504388
TU321833 lncRNA upstream 70360 62578455 ~ 62579127 (+) True G283800
TU321835 lncRNA upstream 71803 62576483 ~ 62577684 (+) True G283802
TU321806 lncRNA upstream 131065 62516801 ~ 62518422 (+) True G283779
TU321739 lncRNA upstream 218552 62425693 ~ 62430935 (+) True LOC110520349
TU321867 lncRNA downstream 4586 62654930 ~ 62655154 (+) True G283833
TU321871 lncRNA downstream 13036 62663380 ~ 62663709 (+) True G283836
TU321875 lncRNA downstream 19867 62670211 ~ 62670488 (+) True G283840
TU321896 lncRNA downstream 62799 62713143 ~ 62713848 (+) True G283860
TU321895 lncRNA downstream 64512 62714856 ~ 62715183 (+) True G283859
XM_036974879.1 mRNA upstream 972 62622919 ~ 62648515 (+) False LOC110520352
XM_036974880.1 mRNA upstream 2535 62623416 ~ 62646952 (+) True LOC110520352
XM_036974865.1 mRNA upstream 37012 62598677 ~ 62612475 (+) False LOC110504388
XM_036974868.1 mRNA upstream 37012 62598677 ~ 62612475 (+) False LOC110504388
XM_036974869.1 mRNA upstream 37012 62598677 ~ 62612475 (+) False LOC110504388
XR_005051351.1 mRNA downstream 48543 62698887 ~ 62701213 (+) True LOC118964306
XM_036965040.1 mRNA downstream 55107 62705451 ~ 62712740 (+) False LOC110504398
XM_021597616.2 mRNA downstream 132902 62783246 ~ 62813081 (+) False LOC110520355
XR_005051352.1 mRNA downstream 207869 62858213 ~ 62860498 (+) True LOC118964307
XM_036974891.1 mRNA downstream 296974 62947318 ~ 63007919 (+) False LOC110520359
TU320883 other upstream 240630 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 452536 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 688012 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1612382 61033766 ~ 61037105 (+) True G281996
TU319500 other upstream 1755709 60891524 ~ 60893778 (+) True G281714
TU321897 other downstream 55987 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 365982 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 475546 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 616775 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 740587 63390931 ~ 63391284 (+) True G284599

Expression Profile