RNA id: TU321871


Basic Information

Item Value
RNA id TU321871
length 330
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G283836
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62663380 ~ 62663709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgcacactaataattcaatattaaactgattatggcagtaggccgagtatggcattagtcatgtaaacaccttactcttcTTATCTTAATCGGTTTAAGGTCATAAACGAAGTAAGCATACACTGATTataacacctggttttctgagcaatctttcaaattattaggacatgtaaataACTTAATCAGAGTTCAagcggtgtatttgatctgcacaTGTGGCAGCACCAGATCACCAACCTCCCTCTTATGTGCAAGTGAAGTAAGTTCAGAACAACTGAAAGCATGCATCTTAGAAATAGTTTGcacatacaaactttatatgCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321867 lncRNA upstream 8226 62654930 ~ 62655154 (+) True G283833
TU321851 lncRNA upstream 13036 62649487 ~ 62650344 (+) True G283817
TU321848 lncRNA upstream 58024 62598750 ~ 62605356 (+) True LOC110504388
TU321833 lncRNA upstream 84253 62578455 ~ 62579127 (+) True G283800
TU321835 lncRNA upstream 85696 62576483 ~ 62577684 (+) True G283802
TU321875 lncRNA downstream 6502 62670211 ~ 62670488 (+) True G283840
TU321896 lncRNA downstream 49434 62713143 ~ 62713848 (+) True G283860
TU321895 lncRNA downstream 51147 62714856 ~ 62715183 (+) True G283859
TU321903 lncRNA downstream 58586 62722295 ~ 62722740 (+) True G283867
TU322092 lncRNA downstream 84719 62748428 ~ 62750633 (+) True G284045
XM_036974879.1 mRNA upstream 14865 62622919 ~ 62648515 (+) False LOC110520352
XM_036974880.1 mRNA upstream 16428 62623416 ~ 62646952 (+) True LOC110520352
XM_036974875.1 mRNA upstream 50905 62598699 ~ 62612475 (+) False LOC110504388
XR_005051351.1 mRNA downstream 35178 62698887 ~ 62701213 (+) True LOC118964306
XM_036965040.1 mRNA downstream 41742 62705451 ~ 62712740 (+) False LOC110504398
XM_021597616.2 mRNA downstream 119537 62783246 ~ 62813081 (+) False LOC110520355
XR_005051352.1 mRNA downstream 194504 62858213 ~ 62860498 (+) True LOC118964307
XM_036974891.1 mRNA downstream 283609 62947318 ~ 63007919 (+) False LOC110520359
TU320883 other upstream 254523 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 466429 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 701905 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1626275 61033766 ~ 61037105 (+) True G281996
TU319500 other upstream 1769602 60891524 ~ 60893778 (+) True G281714
TU321897 other downstream 42622 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 352617 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 462181 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 603410 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 727222 63390931 ~ 63391284 (+) True G284599

Expression Profile