RNA id: TU321875


Basic Information

Item Value
RNA id TU321875
length 278
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G283840
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62670211 ~ 62670488 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catggctaaaggtcaatcagatttgtgaacatggtccctagctgtgtgttgccgctttccatgttgtctgtagcttgtgaggtgtggaaacactttgttgcttttatgaattttgtcttgctgctttttgttttatgttgctctgtctgtatgctacgtcttgcttgtcctatgttgctctgtctgtatgctatttcttgcttgtcctatgttgctatgtcttgcttgttctatgctgctattgtctatattgtaattgtttttaataacctgcccag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321871 lncRNA upstream 6502 62663380 ~ 62663709 (+) True G283836
TU321867 lncRNA upstream 15057 62654930 ~ 62655154 (+) True G283833
TU321851 lncRNA upstream 19867 62649487 ~ 62650344 (+) True G283817
TU321848 lncRNA upstream 64855 62598750 ~ 62605356 (+) True LOC110504388
TU321833 lncRNA upstream 91084 62578455 ~ 62579127 (+) True G283800
TU321896 lncRNA downstream 42655 62713143 ~ 62713848 (+) True G283860
TU321895 lncRNA downstream 44368 62714856 ~ 62715183 (+) True G283859
TU321903 lncRNA downstream 51807 62722295 ~ 62722740 (+) True G283867
TU322092 lncRNA downstream 77940 62748428 ~ 62750633 (+) True G284045
TU322111 lncRNA downstream 93433 62763921 ~ 62768887 (+) True G284057
XM_036974879.1 mRNA upstream 21696 62622919 ~ 62648515 (+) False LOC110520352
XM_036974880.1 mRNA upstream 23259 62623416 ~ 62646952 (+) True LOC110520352
XM_036974875.1 mRNA upstream 57736 62598699 ~ 62612475 (+) False LOC110504388
XR_005051351.1 mRNA downstream 28399 62698887 ~ 62701213 (+) True LOC118964306
XM_036965040.1 mRNA downstream 34963 62705451 ~ 62712740 (+) False LOC110504398
XM_021597616.2 mRNA downstream 112758 62783246 ~ 62813081 (+) False LOC110520355
XR_005051352.1 mRNA downstream 187725 62858213 ~ 62860498 (+) True LOC118964307
XM_036974891.1 mRNA downstream 276830 62947318 ~ 63007919 (+) False LOC110520359
TU320883 other upstream 261354 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 473260 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 708736 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1633106 61033766 ~ 61037105 (+) True G281996
TU319500 other upstream 1776433 60891524 ~ 60893778 (+) True G281714
TU321897 other downstream 35843 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 345838 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 455402 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 596631 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 720443 63390931 ~ 63391284 (+) True G284599

Expression Profile