RNA id: TU321896


Basic Information

Item Value
RNA id TU321896
length 356
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G283860
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62713143 ~ 62713848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACAGCCATAGTGTGTTATGCATCTTACAGCCATAGTGTGTTATGCATCTTACAGCCATAGTGTGTTATGCATCTTACAGCCATAGTGTGTTACACATCTTACAGCCATAGTGTGTTATGCATCTTACAGCCATAGTGTGTTATGCATCTTACAGCCATAGTGTGAGTTATAAAAGCAATGGGCAGCTCTGAGAAGCAACTGCATCATTCAACAACAAGAAATAGTGTCAACATCACAGACTATATCAGGGAGTAAAAACATCAGCTGTTGCAATACACATCATGCAACATGCAACATATTCAGCTCTGTATTACAACCTTTATGAACTTTTACCTCCATAATATCTAAAATGGC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321875 lncRNA upstream 42655 62670211 ~ 62670488 (+) True G283840
TU321871 lncRNA upstream 49434 62663380 ~ 62663709 (+) True G283836
TU321867 lncRNA upstream 57989 62654930 ~ 62655154 (+) True G283833
TU321851 lncRNA upstream 62799 62649487 ~ 62650344 (+) True G283817
TU321848 lncRNA upstream 107787 62598750 ~ 62605356 (+) True LOC110504388
TU321895 lncRNA downstream 1008 62714856 ~ 62715183 (+) True G283859
TU321903 lncRNA downstream 8447 62722295 ~ 62722740 (+) True G283867
TU322092 lncRNA downstream 34580 62748428 ~ 62750633 (+) True G284045
TU322111 lncRNA downstream 50073 62763921 ~ 62768887 (+) True G284057
TU322116 lncRNA downstream 57076 62770924 ~ 62815230 (+) False LOC110520355
XM_036965040.1 mRNA upstream 403 62705451 ~ 62712740 (+) False LOC110504398
XR_005051351.1 mRNA upstream 11930 62698887 ~ 62701213 (+) True LOC118964306
XM_036974879.1 mRNA upstream 64628 62622919 ~ 62648515 (+) False LOC110520352
XM_036974880.1 mRNA upstream 66191 62623416 ~ 62646952 (+) True LOC110520352
XM_036974875.1 mRNA upstream 100668 62598699 ~ 62612475 (+) False LOC110504388
XM_021597616.2 mRNA downstream 69398 62783246 ~ 62813081 (+) False LOC110520355
XR_005051352.1 mRNA downstream 144365 62858213 ~ 62860498 (+) True LOC118964307
XM_036974891.1 mRNA downstream 233470 62947318 ~ 63007919 (+) False LOC110520359
XM_036974892.1 mRNA downstream 233470 62947318 ~ 63007919 (+) True LOC110520359
XR_002472972.2 mRNA downstream 399819 63113667 ~ 63119407 (+) True LOC110520363
TU321897 other upstream 6173 62706331 ~ 62706970 (+) True LOC110504398
TU320883 other upstream 304286 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 516192 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 751668 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1676038 61033766 ~ 61037105 (+) True G281996
TU322433 other downstream 302478 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 412042 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 553271 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 677083 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 992720 63706568 ~ 63722064 (+) False G284986

Expression Profile