RNA id: TU321895


Basic Information

Item Value
RNA id TU321895
length 328
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G283859
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62714856 ~ 62715183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCAGACTCGACTACTCTTCCAGCCATTAGGCTGTAGGCTACATACATCCCAAGATCTGTCAAATAAAAACAACATTTACCAAGTCTTTGAAGATTTGAAGATTTGAAGATTTTTGTATACAGTAGCATAGATGTGTGTATGGCTCCAGTGTCAGATCACACATGTGTAATATCCATATAAAAGCTGATACCATCATGTTTTAATTTTGTGTAAATTATTTGTCTTGTAAAGACTGTAATATATTGTTATTTTGTGCCTCTTATCATAAAGAGAGAGATGTCTCTCGAATCTCTCACTAACCTTGTGCTTTTCCCCTCAACTGCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321896 lncRNA upstream 1008 62713143 ~ 62713848 (+) True G283860
TU321875 lncRNA upstream 44368 62670211 ~ 62670488 (+) True G283840
TU321871 lncRNA upstream 51147 62663380 ~ 62663709 (+) True G283836
TU321867 lncRNA upstream 59702 62654930 ~ 62655154 (+) True G283833
TU321851 lncRNA upstream 64512 62649487 ~ 62650344 (+) True G283817
TU321903 lncRNA downstream 7112 62722295 ~ 62722740 (+) True G283867
TU322092 lncRNA downstream 33245 62748428 ~ 62750633 (+) True G284045
TU322111 lncRNA downstream 48738 62763921 ~ 62768887 (+) True G284057
TU322116 lncRNA downstream 55741 62770924 ~ 62815230 (+) False LOC110520355
TU322118 lncRNA downstream 96048 62811231 ~ 62815230 (+) False LOC110520355
XM_036965040.1 mRNA upstream 2116 62705451 ~ 62712740 (+) False LOC110504398
XR_005051351.1 mRNA upstream 13643 62698887 ~ 62701213 (+) True LOC118964306
XM_036974879.1 mRNA upstream 66341 62622919 ~ 62648515 (+) False LOC110520352
XM_036974880.1 mRNA upstream 67904 62623416 ~ 62646952 (+) True LOC110520352
XM_036974871.1 mRNA upstream 102381 62598712 ~ 62612475 (+) False LOC110504388
XM_021597616.2 mRNA downstream 68063 62783246 ~ 62813081 (+) False LOC110520355
XR_005051352.1 mRNA downstream 143030 62858213 ~ 62860498 (+) True LOC118964307
XM_036974891.1 mRNA downstream 232135 62947318 ~ 63007919 (+) False LOC110520359
XM_036974892.1 mRNA downstream 232135 62947318 ~ 63007919 (+) True LOC110520359
XR_002472972.2 mRNA downstream 398484 63113667 ~ 63119407 (+) True LOC110520363
TU321897 other upstream 7886 62706331 ~ 62706970 (+) True LOC110504398
TU320883 other upstream 305999 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 517905 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 753381 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1677751 61033766 ~ 61037105 (+) True G281996
TU322433 other downstream 301143 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 410707 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 551936 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 675748 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 991385 63706568 ~ 63722064 (+) False G284986

Expression Profile