RNA id: TU322111



Basic Information


Item Value
RNA id TU322111
length 863
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G284057
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62763921 ~ 62768887 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agaaactattctacagtatggaaactaggacctattccacagtatggaaactagaaactattccacagtatggaaactagaaactattctacagtatagaaactagaaactattccacagtatggaaactagaaactattccACAGTATGGAAACCAAACTATAGTATGGAAACATCCAGAACACACAcattggagagagagacagagagtgagggagcaGGACTCACCTTGATTTTCAGCTGTGCCTGATTAGAAGAAATAAAATCAAAGAAACAGACAATtattcacataacacacacacaaataaaacacACCTACACCCCCCGATTATTGACATAATATATCATTAGGGGAAGCAAGGCCTTTACCTTCTGCTTCTGCTGCATGGGCTggaaaaagagaagggggaggCATTATTCAAACTCAGTCGGTAATCTAGTTGATGCCCTGAAGGTATTTACTGCTATAGAGTTTCTGCTCTAACCGGTTGGAAAGGACAAATCTACatgcaaacactcacacacacgtactGTACTTAACCAAGTGTATATTTGCATATGGATCATAGTGAATGTGAGTCATTAATGACTGGAAATGTCTGTAAGCTGCAGCACCTGAaggcctctctgtctctggttctCATGCATGTTGGAGCATGATAAACCTCCTGCATGTGACTCATTAGTCTATATTAGTCACTTTATTGGTCATAGACCACAATGAGCCCTGAGCAGTTAATATATTGTGGAAGCTGTTTTCTGACTCATCCATAGAGACTCCATATCTAACTGTATATCAGAATGTAATCAATCGGACACAGTGTAATGATGTAGAAATGTTCCCATTATTATATCAAGTGTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU322092 lncRNA upstream 13288 62748428 ~ 62750633 (+) True G284045
TU321903 lncRNA upstream 41181 62722295 ~ 62722740 (+) True G283867
TU321895 lncRNA upstream 48738 62714856 ~ 62715183 (+) True G283859
TU321896 lncRNA upstream 50073 62713143 ~ 62713848 (+) True G283860
TU321875 lncRNA upstream 93433 62670211 ~ 62670488 (+) True G283840
TU322116 lncRNA downstream 2037 62770924 ~ 62815230 (+) False LOC110520355
TU322118 lncRNA downstream 42344 62811231 ~ 62815230 (+) False LOC110520355
TU322121 lncRNA downstream 42344 62811231 ~ 62815230 (+) False LOC110520355
TU322125 lncRNA downstream 42344 62811231 ~ 62815230 (+) True LOC110520355
TU322160 lncRNA downstream 55322 62824209 ~ 62824528 (+) True G284091
XM_036965040.1 mRNA upstream 51181 62705451 ~ 62712740 (+) False LOC110504398
XR_005051351.1 mRNA upstream 62708 62698887 ~ 62701213 (+) True LOC118964306
XM_036974879.1 mRNA upstream 115406 62622919 ~ 62648515 (+) False LOC110520352
XM_036974880.1 mRNA upstream 116969 62623416 ~ 62646952 (+) True LOC110520352
XM_036974871.1 mRNA upstream 151446 62598712 ~ 62612475 (+) False LOC110504388
XM_021597616.2 mRNA downstream 14359 62783246 ~ 62813081 (+) False LOC110520355
XR_005051352.1 mRNA downstream 89326 62858213 ~ 62860498 (+) True LOC118964307
XM_036974891.1 mRNA downstream 178431 62947318 ~ 63007919 (+) False LOC110520359
XM_036974892.1 mRNA downstream 178431 62947318 ~ 63007919 (+) True LOC110520359
XR_002472972.2 mRNA downstream 344780 63113667 ~ 63119407 (+) True LOC110520363
TU321897 other upstream 56951 62706331 ~ 62706970 (+) True LOC110504398
TU320883 other upstream 355064 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 566970 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 802446 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1726816 61033766 ~ 61037105 (+) True G281996
TU322433 other downstream 247439 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 357003 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 498232 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 622044 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 937681 63706568 ~ 63722064 (+) False G284986

Expression Profile