RNA id: TU322164


Basic Information

Item Value
RNA id TU322164
length 219
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G284095
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62831419 ~ 62831637 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTATAAACCTCACTGCtcatgaagggagagagagggagaggaataagTGATTATCAGGGTTGAGATATGTCCTCAGAGAcagacaactacacacacatgGACCCACCCCTGAATTAGTACTTAGTAAGAGAAGCCCTTAGAAACACAGAtataatatatttgagattcattgAAGCATCTTTACACAGCTTTAACCTTCCAACCCCACAGCCCTAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322162 lncRNA upstream 1192 62829685 ~ 62830227 (+) True G284093
TU322160 lncRNA upstream 6891 62824209 ~ 62824528 (+) True G284091
TU322116 lncRNA upstream 16189 62770924 ~ 62815230 (+) False LOC110520355
TU322165 lncRNA downstream 442 62832079 ~ 62832414 (+) True G284096
TU322251 lncRNA downstream 31109 62862746 ~ 62863728 (+) True G284174
TU322286 lncRNA downstream 86844 62918481 ~ 62919238 (+) True G284198
TU322294 lncRNA downstream 101740 62933377 ~ 62936097 (+) True G284206
TU322403 lncRNA downstream 139847 62971484 ~ 63020713 (+) True G284291
XM_021597616.2 mRNA upstream 18338 62783246 ~ 62813081 (+) False LOC110520355
XM_036965040.1 mRNA upstream 118679 62705451 ~ 62712740 (+) False LOC110504398
XR_005051351.1 mRNA upstream 130206 62698887 ~ 62701213 (+) True LOC118964306
XM_036974879.1 mRNA upstream 182904 62622919 ~ 62648515 (+) False LOC110520352
XR_005051352.1 mRNA downstream 26576 62858213 ~ 62860498 (+) True LOC118964307
XM_036974891.1 mRNA downstream 115681 62947318 ~ 63007919 (+) False LOC110520359
XM_036974892.1 mRNA downstream 115681 62947318 ~ 63007919 (+) True LOC110520359
XR_002472972.2 mRNA downstream 282030 63113667 ~ 63119407 (+) True LOC110520363
XM_021597625.2 mRNA downstream 292743 63124380 ~ 63129015 (+) False LOC110520364
TU321897 other upstream 124449 62706331 ~ 62706970 (+) True LOC110504398
TU320883 other upstream 422562 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 634468 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 869944 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1794314 61033766 ~ 61037105 (+) True G281996
TU322433 other downstream 184689 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 294253 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 435482 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 559294 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 874931 63706568 ~ 63722064 (+) False G284986

Expression Profile