RNA id: TU322165


Basic Information

Item Value
RNA id TU322165
length 336
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G284096
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62832079 ~ 62832414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttaatgctgagtgcaAAGCAGAGATGCATCAGGtcccatttttacagtctttggtatgaGGGATTAAACTcacaaccttccaatctcaggaGGACACTCCAACCACAAGGCCACTATCACCTAAGTACTTATAATCAAACAAGGCCTTGTTTGACAAGGGCCaatcattttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctacaccggccaaacctggacaacgctgggcaatttgtgcgccgccctatgggactccaaatcacagtcggttgtgatacagcctggattcaaaccagggtgtctgtagtgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322164 lncRNA upstream 442 62831419 ~ 62831637 (+) True G284095
TU322162 lncRNA upstream 1852 62829685 ~ 62830227 (+) True G284093
TU322160 lncRNA upstream 7551 62824209 ~ 62824528 (+) True G284091
TU322118 lncRNA upstream 16849 62811231 ~ 62815230 (+) False LOC110520355
TU322251 lncRNA downstream 30332 62862746 ~ 62863728 (+) True G284174
TU322286 lncRNA downstream 86067 62918481 ~ 62919238 (+) True G284198
TU322294 lncRNA downstream 100963 62933377 ~ 62936097 (+) True G284206
TU322403 lncRNA downstream 139070 62971484 ~ 63020713 (+) True G284291
TU322466 lncRNA downstream 234535 63066949 ~ 63067154 (+) True G284345
XM_021597616.2 mRNA upstream 18998 62783246 ~ 62813081 (+) False LOC110520355
XM_036965040.1 mRNA upstream 119339 62705451 ~ 62712740 (+) False LOC110504398
XR_005051351.1 mRNA upstream 130866 62698887 ~ 62701213 (+) True LOC118964306
XM_036974879.1 mRNA upstream 183564 62622919 ~ 62648515 (+) False LOC110520352
XR_005051352.1 mRNA downstream 25799 62858213 ~ 62860498 (+) True LOC118964307
XM_036974891.1 mRNA downstream 114904 62947318 ~ 63007919 (+) False LOC110520359
XM_036974892.1 mRNA downstream 114904 62947318 ~ 63007919 (+) True LOC110520359
XR_002472972.2 mRNA downstream 281253 63113667 ~ 63119407 (+) True LOC110520363
XM_021597625.2 mRNA downstream 291966 63124380 ~ 63129015 (+) False LOC110520364
TU321897 other upstream 125109 62706331 ~ 62706970 (+) True LOC110504398
TU320883 other upstream 423222 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 635128 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 870604 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1794974 61033766 ~ 61037105 (+) True G281996
TU322433 other downstream 183912 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 293476 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 434705 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 558517 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 874154 63706568 ~ 63722064 (+) False G284986

Expression Profile