RNA id: TU322312


Basic Information

Item Value
RNA id TU322312
length 917
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G284217
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62862753 ~ 62864090 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctttgccttgatgacagctttgcacactcttggcattctctcaaccagcttcaactggaatgcttttccaacagtcttgaaggagttcccacttgttgctgagcacttgttggtttgTTTTCCTTCACTTTGAGGTCCATCTCGCTCAAaccgtctcaattgggttgaggtcgggtgattgtggaggcaaggtcatctgatgcagcactccatcactctccttcttggtcaaatagcccttacacagcctagaggtgtgttttgggtaattttcctgttgaaaaacaaacgatagtcccactaagcacaaaacaGATGGGGCGGCGTatcgcttcagaatgctgtggtagccatgctggttgagtgtgccttcaattctaaataaatcaccaacagtgtcaccagcagagcacccccatcacaccacctccatgcttcatggtgggaaccacacatgtggagatcagcagtctccactgaacagttgatgttgagatgtgtctgttacttgaattctgtgaagcatttatttgggctgcaatttctgaggctagtaactctaatgaacttatcctttgcagcagaggtaactttgggtcttcctttcctgtggcggtcctcatgagagacagtttcatcatagctcttgacgGTTTCTGaaactacacttgaagaaactttcaacgttcttgaaatgtttccaaatgaactgaccttcatgtcttaaaagtaTTGATTGCCTATTGTTTATCTattttaccaaattgggctatttcctgtataccaccccctatcttgtcacaacacaatgcattaagaaggaaaacatttccacaaattaacttttaacaaggcacacctgttaattgaaatgcattccaggtgacatgattctggttgagagaatgctatgagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322301 lncRNA downstream 7966 62854583 ~ 62854787 (-) True G284213
TU322236 lncRNA downstream 26709 62834494 ~ 62836044 (-) True G284162
TU322235 lncRNA downstream 27303 62834494 ~ 62835450 (-) False G284162
TU322087 lncRNA downstream 119823 62742521 ~ 62742930 (-) True G284040
TU322070 lncRNA downstream 136708 62725021 ~ 62726045 (-) True G284023
TU322320 lncRNA upstream 2628 62866337 ~ 62868346 (-) False G284218
TU322316 lncRNA upstream 2878 62866587 ~ 62868740 (-) False G284218
TU322318 lncRNA upstream 2878 62866587 ~ 62868346 (-) True G284218
TU322323 lncRNA upstream 5113 62868822 ~ 62869461 (-) True G284220
TU322347 lncRNA upstream 38607 62902316 ~ 62903140 (-) True G284244
XM_021597620.2 mRNA downstream 3758 62855879 ~ 62858995 (-) True LOC110520358
XM_036974883.1 mRNA downstream 8839 62841460 ~ 62853914 (-) True LOC110520356
XM_021597617.2 mRNA downstream 8871 62841460 ~ 62853882 (-) False LOC110520356
XM_036974884.1 mRNA downstream 9128 62841460 ~ 62853625 (-) False LOC110520356
XM_021597618.2 mRNA downstream 21656 62832908 ~ 62841097 (-) True LOC110520357
XM_036974886.1 mRNA upstream 6039 62869748 ~ 62943518 (-) True LOC110504409
XM_021597622.2 mRNA upstream 147425 63011134 ~ 63025281 (-) True LOC110520360
XM_021597623.2 mRNA upstream 165169 63028878 ~ 63056733 (-) True LOC110520361
XM_036974898.1 mRNA upstream 236365 63100074 ~ 63115360 (-) True chmp2ba
XM_036965051.1 mRNA upstream 300585 63164294 ~ 63167048 (-) True LOC118944692
TU322065 other downstream 147576 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 5273570 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 5459178 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 5564991 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 7451266 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 2105840 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 2150550 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 2190991 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 2190991 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 2371471 65235180 ~ 65235908 (-) True G286953

Expression Profile