RNA id: TU322316


Basic Information

Item Value
RNA id TU322316
length 2154
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G284218
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62866337 ~ 62868740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacatctcaagacagcagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaaatttgttgcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagccctgacctcaatcctatagaaaatatgtgggcagaactgataaagcgtgtgcaagcaaggaggcctacaaacctgactcagttacactagctctgtcaggaggaatgggccaaaattcacccaagttattgtgggaagcttgtggaaggctacccgcaacgtttaacccaagttaaacaatttaaaggcaatgctaccaaatagtaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaataaaagctgaaataaataattctctctactattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaagacagggattttttactaggattaaatgtcagggatagtgaaaaacagagtttaaatgtatttggctaagatgtatgtaaacttcagacatcaactgtatgttttactatccttgtggggacctaaaattgatttccattcaaaatcctactttCCCTAaacctattttccctaaccctaacactaaacctaacccttaccctaaccttaacccctaaccctaaccctgattgtaaccctaaccctaaacctaacatctacgcctaaaatagcctttgtcctcgtAAGGAACTGGGAAATGTCCCCATGGGGGATAATTTTCCtttttttactatccttgtgaggatttccagtacccacaaggatagtaatacccacacacacacacaacacaacacacaccgcCACCCCAGCTCCAACCAGCCTCAAAGGAGCAGGGGTCTTTATCCACGCAGGCACTCCCAGGACAGCTATAGGAGGGGTCCTTCATCAACCTCATCAATGACTTATGATGTTGACATCATCAGGCGGTGCATAGTATTTTTCTACTGCTTCAGTGTGTATATGCTCTAAACATGAGTGTCCATATGAATGTGTGGTATGGCTAGAGACAGGCCGGACTGGTTACAGAAGCACCTAAAGACCCTGGCTTACCTTATACTTGTTCCTTCTGGtcggtgtgagtgtgtctgtgtgtgtatgtgtgtttatgtgtgtgtatgtgtgtgcgtgtgagtgcatGCGCGTGTGACCAGCAGTGGTTAATACCAGCCATGTGGCAGCTCAACAACGGGACAGAAAGCACACCAATGGTCTCAAATGGTCTTAAACATACCTCACGTCTGGCAAGCTACATCAAACCTCCTATTTCACTGGCGAAGCACACAACAGTACTCCTCTTTCATTGGCTAAGCACACAATGGTGGTCCTTTTTTATTGGCTAAGCACACAGCAGTATTCCTCTCTCATTGGTTAAGCACACAACAGTGGTCCACTCCTATCTATGCACACAACTACTGTTTCATTGACTCAGCACAAAACAGCTGTTCAACAACAGAAGTAGGATCAACTGGTTTAGAAGAGTAAAGCAGATAAGTCTACAGGTCAGGAAGACATAGTGAAACAGAAGCACACAGAGTTAGGAAGGCCAGAACAAGTTGGCTACAGCACAGATGAGACTAGATCTACAATAGACAGACAGCACACTCCGTCTCAGCACAAAGCACACCCTTGTGTGAGACCATCTGGTTCTGATTCGAGTAGCAGCAGCCGGGGAGTCTGGGTAATCCCTGAGTTGGGTGACAGACAGATGACTTTAAACACCGAAAGATTCGGATGAGATTAGAGTCTTTCCATCAagccctgatacacacacacatacacaccaacacacacactgtgacgtGAAAGGACTGGATGGGTCCCagtccctcccctcctcctcctcctcctcctcctcagagagagaatagagtgaAACCCGGTCCAGAAGCAACCCTTAGCCCCAGATGAACCAGCTGTAACACTGTTTCTACTGAACCCAAAATGCCAgcctgtttgtctgtttctacTATTTTTCTGTGGAGCTAAATCACCTCCTTGTTGGAGATGCAGCACTTCCACATGATTCAGTCACCACACAGCACCCATCTTGCTATTCCTGCTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322313 lncRNA downstream 2497 62862753 ~ 62864090 (-) True G284217
TU322312 lncRNA downstream 2878 62862753 ~ 62863709 (-) False G284217
TU322301 lncRNA downstream 11800 62854583 ~ 62854787 (-) True G284213
TU322236 lncRNA downstream 30543 62834494 ~ 62836044 (-) True G284162
TU322235 lncRNA downstream 31137 62834494 ~ 62835450 (-) False G284162
TU322323 lncRNA upstream 82 62868822 ~ 62869461 (-) True G284220
TU322347 lncRNA upstream 33576 62902316 ~ 62903140 (-) True G284244
TU322363 lncRNA upstream 49766 62918506 ~ 62919245 (-) False G284258
TU322364 lncRNA upstream 49766 62918506 ~ 62919245 (-) False G284258
TU322365 lncRNA upstream 49766 62918506 ~ 62919245 (-) True G284258
XM_021597620.2 mRNA downstream 7592 62855879 ~ 62858995 (-) True LOC110520358
XM_036974883.1 mRNA downstream 12673 62841460 ~ 62853914 (-) True LOC110520356
XM_021597617.2 mRNA downstream 12705 62841460 ~ 62853882 (-) False LOC110520356
XM_036974884.1 mRNA downstream 12962 62841460 ~ 62853625 (-) False LOC110520356
XM_021597618.2 mRNA downstream 25490 62832908 ~ 62841097 (-) True LOC110520357
XM_036974886.1 mRNA upstream 1008 62869748 ~ 62943518 (-) True LOC110504409
XM_021597622.2 mRNA upstream 142394 63011134 ~ 63025281 (-) True LOC110520360
XM_021597623.2 mRNA upstream 160138 63028878 ~ 63056733 (-) True LOC110520361
XM_036974898.1 mRNA upstream 231334 63100074 ~ 63115360 (-) True chmp2ba
XM_036965051.1 mRNA upstream 295554 63164294 ~ 63167048 (-) True LOC118944692
TU322065 other downstream 151410 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 5277404 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 5463012 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 5568825 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 7455100 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 2100809 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 2145519 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 2185960 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 2185960 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 2366440 65235180 ~ 65235908 (-) True G286953

Expression Profile