RNA id: TU322375



Basic Information


Item Value
RNA id TU322375
length 455
lncRNA type intronic
GC content 0.40
exon number 2
gene id G284267
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62933280 ~ 62936135 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggagagtcggaccaaaatgcagcgtgtagattgcgatccatgtttaatgaacaaacgtaaaacacgaatcaattataaacactacaaaacaaagaacgtaacgaaaaccgaaacagcctatactagtGTAATCTAACACAGGAACAACGACACTAAGGACATCAAGaaaaaacccaacaccaaacaggctacctaaatatggttcccaatcagagacaatgacgaacacctgcctctgattgagaaccatatcaggccaaacatagaactagacaaactagacatgaaacatagaatgcccactcagctcacaccctgaccaaccaaaacatagaaatatacaaagtaaactatggtcagggtgtgacaacggggaaaagtgtcctccattcactatttaagtacatagatgacatgtattttatcCCGCTGACCCTGTTTcgatatgtaaagac

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU322363 lncRNA downstream 14035 62918506 ~ 62919245 (-) False G284258
TU322364 lncRNA downstream 14035 62918506 ~ 62919245 (-) False G284258
TU322365 lncRNA downstream 14035 62918506 ~ 62919245 (-) True G284258
TU322347 lncRNA downstream 30140 62902316 ~ 62903140 (-) True G284244
TU322323 lncRNA downstream 63819 62868822 ~ 62869461 (-) True G284220
TU322581 lncRNA upstream 134491 63070626 ~ 63071625 (-) True G284448
TU322585 lncRNA upstream 145219 63081354 ~ 63081556 (-) True G284452
TU322586 lncRNA upstream 146894 63083029 ~ 63083228 (-) True G284453
TU322590 lncRNA upstream 151816 63087951 ~ 63089637 (-) True G284457
TU322591 lncRNA upstream 153668 63089803 ~ 63090207 (-) True G284458
XM_021597620.2 mRNA downstream 74285 62855879 ~ 62858995 (-) True LOC110520358
XM_036974883.1 mRNA downstream 79366 62841460 ~ 62853914 (-) True LOC110520356
XM_021597617.2 mRNA downstream 79398 62841460 ~ 62853882 (-) False LOC110520356
XM_036974884.1 mRNA downstream 79655 62841460 ~ 62853625 (-) False LOC110520356
XM_021597618.2 mRNA downstream 92183 62832908 ~ 62841097 (-) True LOC110520357
XM_021597622.2 mRNA upstream 74999 63011134 ~ 63025281 (-) True LOC110520360
XM_021597623.2 mRNA upstream 92743 63028878 ~ 63056733 (-) True LOC110520361
XM_036974898.1 mRNA upstream 163939 63100074 ~ 63115360 (-) True chmp2ba
XM_036965051.1 mRNA upstream 228159 63164294 ~ 63167048 (-) True LOC118944692
XM_036974896.1 mRNA upstream 330983 63267118 ~ 63280956 (-) False epsti1
TU322065 other downstream 218103 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 5344097 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 5529705 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 5635518 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 7521793 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 2033414 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 2078124 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 2118565 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 2118565 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 2299045 65235180 ~ 65235908 (-) True G286953

Expression Profile


TU322375 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
End of interactive chart.

TU322375 Expression in each Bioproject

Bar chart with 17 bars.
TU322375 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.