RNA id: TU322294


Basic Information

Item Value
RNA id TU322294
length 306
lncRNA type intronic
GC content 0.38
exon number 2
gene id G284206
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62933377 ~ 62936097 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaccatagtttactttgtatatttctatgttttggttggtcagggtgtgagctgagtgggcattctatgtttcatgtctagtttgtctagttctatgtttggcctgatatggttctcaatcagaggcaggtgttcgtcattgtctctgattgggaaccatatttaggtatcctgtttggtgttgggttTTAGTGTCGTTGTTCCTGTGTTAGATTACactagtataggctgtttcggttttcgttacgttctttgttttgtagtgtttataattgattcgtgttttacgtttgttcattaaacatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322286 lncRNA upstream 14139 62918481 ~ 62919238 (+) True G284198
TU322251 lncRNA upstream 69649 62862746 ~ 62863728 (+) True G284174
TU322165 lncRNA upstream 100963 62832079 ~ 62832414 (+) True G284096
TU322164 lncRNA upstream 101740 62831419 ~ 62831637 (+) True G284095
TU322162 lncRNA upstream 103150 62829685 ~ 62830227 (+) True G284093
TU322403 lncRNA downstream 35387 62971484 ~ 63020713 (+) True G284291
TU322466 lncRNA downstream 130852 63066949 ~ 63067154 (+) True G284345
TU322467 lncRNA downstream 131128 63067225 ~ 63067470 (+) True G284346
TU322476 lncRNA downstream 139651 63075748 ~ 63076164 (+) True G284355
TU322487 lncRNA downstream 160889 63096986 ~ 63097218 (+) True G284366
XR_005051352.1 mRNA upstream 72879 62858213 ~ 62860498 (+) True LOC118964307
XM_021597616.2 mRNA upstream 120296 62783246 ~ 62813081 (+) False LOC110520355
XM_036965040.1 mRNA upstream 220637 62705451 ~ 62712740 (+) False LOC110504398
XR_005051351.1 mRNA upstream 232164 62698887 ~ 62701213 (+) True LOC118964306
XM_036974880.1 mRNA upstream 286425 62623416 ~ 62646952 (+) True LOC110520352
XM_036974891.1 mRNA downstream 11221 62947318 ~ 63007919 (+) False LOC110520359
XM_036974892.1 mRNA downstream 11221 62947318 ~ 63007919 (+) True LOC110520359
XR_002472972.2 mRNA downstream 177570 63113667 ~ 63119407 (+) True LOC110520363
XM_021597625.2 mRNA downstream 188283 63124380 ~ 63129015 (+) False LOC110520364
XM_021597627.2 mRNA downstream 237139 63173236 ~ 63204595 (+) False LOC110520366
TU321897 other upstream 226407 62706331 ~ 62706970 (+) True LOC110504398
TU320883 other upstream 524520 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 736426 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 971902 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1896272 61033766 ~ 61037105 (+) True G281996
TU322433 other downstream 80229 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 189793 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 331022 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 454834 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 770471 63706568 ~ 63722064 (+) False G284986

Expression Profile