RNA id: TU322476



Basic Information


Item Value
RNA id TU322476
length 417
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G284355
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63075748 ~ 63076164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gctcattctgcgtgtgatttcctgcaagacatgaatgtcattgttctgccatggccaacgaagagcaaggatctcaatcccattgagcacgtctgggacctgttggatcagagggtgagggctagaaatgtccaggaacttgcaggtgccttgggggaagagtggggtaacatctcacagcaagaactggcaaacctggtgcagtccatgaggaggagatgcactgcagtacttaatacagctggtggccacaccagatactgactgttacttttgattttgaccacccctttgttcagggacacattattccatttctgttagtcacatgtctgtggaacgttttcagtttgtctcagttgttgaatcttgttgttcatacaaatatttacacatgttaagtttgctgaaaataag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU322467 lncRNA upstream 8278 63067225 ~ 63067470 (+) True G284346
TU322466 lncRNA upstream 8594 63066949 ~ 63067154 (+) True G284345
TU322403 lncRNA upstream 55035 62971484 ~ 63020713 (+) True G284291
TU322294 lncRNA upstream 139651 62933377 ~ 62936097 (+) True G284206
TU322286 lncRNA upstream 156510 62918481 ~ 62919238 (+) True G284198
TU322487 lncRNA downstream 20822 63096986 ~ 63097218 (+) True G284366
TU322475 lncRNA downstream 48644 63124808 ~ 63125815 (+) False LOC110520364
TU322604 lncRNA downstream 54013 63130177 ~ 63130380 (+) True G284471
TU322606 lncRNA downstream 56109 63132273 ~ 63132581 (+) True G284473
TU322681 lncRNA downstream 181199 63257363 ~ 63257713 (+) True G284535
XM_036974891.1 mRNA upstream 67829 62947318 ~ 63007919 (+) False LOC110520359
XM_036974892.1 mRNA upstream 67829 62947318 ~ 63007919 (+) True LOC110520359
XR_005051352.1 mRNA upstream 215250 62858213 ~ 62860498 (+) True LOC118964307
XM_021597616.2 mRNA upstream 262667 62783246 ~ 62813081 (+) False LOC110520355
XM_036965040.1 mRNA upstream 363008 62705451 ~ 62712740 (+) False LOC110504398
XR_002472972.2 mRNA downstream 37503 63113667 ~ 63119407 (+) True LOC110520363
XM_021597625.2 mRNA downstream 48216 63124380 ~ 63129015 (+) False LOC110520364
XM_021597627.2 mRNA downstream 97072 63173236 ~ 63204595 (+) False LOC110520366
XM_021597626.2 mRNA downstream 97079 63173243 ~ 63204595 (+) False LOC110520366
XM_021597628.2 mRNA downstream 97079 63173243 ~ 63204595 (+) False LOC110520366
TU322433 other upstream 53157 63016326 ~ 63022591 (+) True G284313
TU321897 other upstream 368778 62706331 ~ 62706970 (+) True LOC110504398
TU320883 other upstream 666891 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 878797 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 1114273 61957388 ~ 61961475 (+) True G282707
TU322474 other downstream 49726 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 190955 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 314767 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 630404 63706568 ~ 63722064 (+) False G284986
TU323188 other downstream 666842 63743006 ~ 63745493 (+) False G285001

Expression Profile