RNA id: TU322714


Basic Information

Item Value
RNA id TU322714
length 1886
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id G284561
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63318438 ~ 63320782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGAGTTTTGGATAAAAACATTTTATTCGATTAGAAAACATAATTTAAATGAGTAGATACCAATTAAACAGAGACAACAAGCACAGCACACACTGGACACAAGatcagagcagagggagagagacagaccgagataGAGACATCCATAGATGGATATGTAGACCTAAAATCCCAACCCAACAGTATCAGTGGGTTACTaaagccaggagagagagagaatgagagagagagagagagagagaaagagagagagagaaaaggtaagagagaaagagagagagagagagagagagagagagagagagagaaagagagagagagagaaaaaaagagagagagagagagagagagagagagagagagagagagaaagagagatgttgagtatgttgtttgtgtgtgcatgtgtctggcTAATGCTGCAGGTCTGATGGAGTGTGACACTGGGTTTTTACACCAAACAACCCCACAACACACTGGACGTGAGGGGTAACAAGGGTCACAGTTATAAATCTGTCCTGTACTCCCCCACGCCCATTCCCGAATTCTCCAATTCCTGTCCATATTTCAGTTGCAGCAGTCCGATATTCACGGATCCCTCCCAGCCTAGTGGGAGTCAGCTGTTGACAGACCAGTTACACAactgctccagagagagagaaaacagagagagagaaaacagagagagagaaaagagagagagaaagaacagagagagagagaggatacagagggagaggatacagagtgagagaggatacagagagagagaggatacagagagagaggatacagagagagagaggcagagagagagagggaacacagagagagagaggatacagagagagaggatacagagagagagaggatacagagggagagagggaacaaagagagagagggaacagagcgagagagggaacaaagagagagagggaacagagagagagatgatacagagagagaggatacagagagagagagggaacagagagagagaggatacagagagagagagagagggaacagagagagggagagtcttaaatcagagagagggaacagagagaggcatCTCAAACCATTCCAGTCCATTAGAGAGAGACGTTAGGACTAAGAACCTTCTGTTCTGTTGGCTGGGGTCGGGTCACTACGTTACCATAGAGAAGGTCTGCTCTGTGACCACTTTGGCTGACATCAGTGGATTTAGTTATACAGCATCAAGTAGAGATCCATGTGGATTCCTCTGCCTCAGTGTCAGCAGATCCCTTGCAAAGATATAACTCTGAAAGATCCATATGGATTCCTCTGCCTCTGTCAGCAGATCCCTGGCAAAGATATAACTCTGAAAGATCCATATGGATTCCTCTGCCTCTGTCAGCAGATCCCTGGCAAAGATATAACTCTGAAAGATCCATATGGATTCCTCTGCCTCAGTGTCAGCAGATCCCTGGCAAAGATATAACTCTGAAAGATCCATCAGGGGATCTTGTAGCTTTTGTTCTTGTCCCGTGTCTGTTTTTGTTTGAGTATTATCACTATGCACTGTGGATGTCTGTGgatacacaacatacacacacactgttcgaACAGTCTGTGGATTTGACACGCCTTCTATTCATGTGTCCACCAGGTTTTGAGGCTGGTCAGGAAGTGTGTATGTTTCTGTCCCACATATGGTTTTTCAGGCCATGTGTGTGTCCTGGGTCATccgatgtgtgtgtgtcctgttccATACAGTGTGTGTGGGTCCCTGTGTCACACGGAGCTGAGGCTCTGGAAGCCACAGAAGTTCCAGCGTTTCTCCAGCGTGGCTCCCACTCCACTCAGCTCCTGTCTGAAGACACTTGGCAGACGACCCATCAGAGACTCCAACTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322710 lncRNA upstream 4612 63312798 ~ 63313826 (+) True G284560
TU322685 lncRNA upstream 41109 63267119 ~ 63277329 (+) True G284537
TU322681 lncRNA upstream 60725 63257363 ~ 63257713 (+) True G284535
TU322606 lncRNA upstream 185857 63132273 ~ 63132581 (+) True G284473
TU322604 lncRNA upstream 188058 63130177 ~ 63130380 (+) True G284471
TU322729 lncRNA downstream 27886 63348668 ~ 63352511 (+) True G284575
TU322737 lncRNA downstream 41105 63361887 ~ 63362372 (+) True G284582
TU322746 lncRNA downstream 59346 63380128 ~ 63380363 (+) True G284591
TU322750 lncRNA downstream 65660 63386442 ~ 63386950 (+) True G284595
TU322755 lncRNA downstream 70671 63391453 ~ 63391717 (+) True G284600
XM_021597631.2 mRNA upstream 83781 63225253 ~ 63234657 (+) False LOC110520367
XM_021597632.2 mRNA upstream 83781 63225255 ~ 63234657 (+) True LOC110520367
XM_021597626.2 mRNA upstream 113843 63173243 ~ 63204595 (+) False LOC110520366
XM_021597635.2 mRNA downstream 128578 63449360 ~ 63457571 (+) False lacc1
XM_021597636.2 mRNA downstream 199022 63519804 ~ 63525770 (+) False serp2
XM_021597637.2 mRNA downstream 199042 63519824 ~ 63525770 (+) False serp2
XM_021597641.2 mRNA downstream 305058 63625840 ~ 63682242 (+) False gtf2f2b
XM_021597640.2 mRNA downstream 305396 63626178 ~ 63682242 (+) True gtf2f2b
TU322683 other upstream 6044 63267119 ~ 63312394 (+) False G284537
TU322474 other upstream 189480 63125890 ~ 63128958 (+) True LOC110520364
TU322433 other upstream 295847 63016326 ~ 63022591 (+) True G284313
TU321897 other upstream 611468 62706331 ~ 62706970 (+) True LOC110504398
TU320883 other upstream 909581 62367614 ~ 62408857 (+) True LOC110520346
TU322754 other downstream 70149 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 385786 63706568 ~ 63722064 (+) False G284986
TU323188 other downstream 422224 63743006 ~ 63745493 (+) False G285001
TU323192 other downstream 422224 63743006 ~ 63745493 (+) True G285001
TU323408 other downstream 750650 64071432 ~ 64083982 (+) True G285203

Expression Profile