RNA id: TU322737



Basic Information


Item Value
RNA id TU322737
length 486
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G284582
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63361887 ~ 63362372 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGCTGGTCATACCAGGTCCTCTGTGCTCCTCTCTCTGGCTTTACCTTCCAGAGCTCTCATCAGAACCACAGCTCCCTCAGGCTGCACACCGGACCACACCGGACCACACCggaccaggacaggacaggatggagggatgaggagaagaACAGTTGAATGGAGGGCTGAAGTACTCAGTTATCGATAGGATCCCATCTCCCCTCTGCTAAACCGGTGGGAAAGAAGAACAGAGCAGTTGTGCAACTTGAATCAATGTTTTACAATCAAATGGTTGCAGATGCAGCTTTAGCACAATACAATCAGCAAGACATTGTTAATGAAGTCCTATTTCCACCCATACAGACAAACATTCACACATGTACACAGAACTACATGTCTGGTTCAATAgcagccctcccctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctccctccctctctccct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU322729 lncRNA upstream 9376 63348668 ~ 63352511 (+) True G284575
TU322714 lncRNA upstream 41105 63318438 ~ 63320782 (+) False G284561
TU322712 lncRNA upstream 41105 63318831 ~ 63320782 (+) False G284561
TU322713 lncRNA upstream 41105 63318831 ~ 63320782 (+) True G284561
TU322710 lncRNA upstream 48061 63312798 ~ 63313826 (+) True G284560
TU322746 lncRNA downstream 17756 63380128 ~ 63380363 (+) True G284591
TU322750 lncRNA downstream 24070 63386442 ~ 63386950 (+) True G284595
TU322755 lncRNA downstream 29081 63391453 ~ 63391717 (+) True G284600
TU322771 lncRNA downstream 52384 63414756 ~ 63457553 (+) True lacc1
TU322802 lncRNA downstream 107984 63470356 ~ 63470637 (+) True G284646
XM_021597631.2 mRNA upstream 127230 63225253 ~ 63234657 (+) False LOC110520367
XM_021597632.2 mRNA upstream 127230 63225255 ~ 63234657 (+) True LOC110520367
XM_021597626.2 mRNA upstream 157292 63173243 ~ 63204595 (+) False LOC110520366
XM_021597635.2 mRNA downstream 86988 63449360 ~ 63457571 (+) False lacc1
XM_021597636.2 mRNA downstream 157432 63519804 ~ 63525770 (+) False serp2
XM_021597637.2 mRNA downstream 157452 63519824 ~ 63525770 (+) False serp2
XM_021597641.2 mRNA downstream 263468 63625840 ~ 63682242 (+) False gtf2f2b
XM_021597640.2 mRNA downstream 263806 63626178 ~ 63682242 (+) True gtf2f2b
TU322683 other upstream 49493 63267119 ~ 63312394 (+) False G284537
TU322474 other upstream 232929 63125890 ~ 63128958 (+) True LOC110520364
TU322433 other upstream 339296 63016326 ~ 63022591 (+) True G284313
TU321897 other upstream 654917 62706331 ~ 62706970 (+) True LOC110504398
TU320883 other upstream 953030 62367614 ~ 62408857 (+) True LOC110520346
TU322754 other downstream 28559 63390931 ~ 63391284 (+) True G284599
TU323169 other downstream 344196 63706568 ~ 63722064 (+) False G284986
TU323188 other downstream 380634 63743006 ~ 63745493 (+) False G285001
TU323192 other downstream 380634 63743006 ~ 63745493 (+) True G285001
TU323408 other downstream 709060 64071432 ~ 64083982 (+) True G285203

Expression Profile