RNA id: TU322939



Basic Information


Item Value
RNA id TU322939
length 214
lncRNA type intronic
GC content 0.50
exon number 1
gene id G284775
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63385250 ~ 63385463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTTGATAGGCAGGGTGGGCATAGTTGTAGCTGCTTTGCCTAGCTTGAAGTAACTTCATTCGAGCGATTTCATATTTTGCGCATGCGTATTGCCTTAACATGTTGTGTGGGTAATGCTGGCGCAAGCTGTGCACAGGCAACCACCCCCCATGAAACCATCCTCCTCACTCTGCTAGCTCTCCGGCAGgcaaacagagtgagtactgtactgtcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU322849 lncRNA downstream 67188 63317266 ~ 63318062 (-) True G284689
TU322889 lncRNA downstream 112642 63270467 ~ 63272608 (-) True G284729
TU322892 lncRNA downstream 113474 63271494 ~ 63271776 (-) True G284731
TU322826 lncRNA downstream 222455 63162562 ~ 63162795 (-) True G284669
TU322823 lncRNA downstream 226540 63158416 ~ 63158710 (-) True G284666
TU322942 lncRNA upstream 4057 63389520 ~ 63389759 (-) True G284778
TU322943 lncRNA upstream 5581 63391044 ~ 63391399 (-) True G284779
TU322944 lncRNA upstream 6633 63392096 ~ 63392327 (-) True G284780
TU322965 lncRNA upstream 29293 63414756 ~ 63457553 (-) True G284797
TU323020 lncRNA upstream 108607 63494070 ~ 63494497 (-) True G284848
XM_036974894.1 mRNA downstream 102278 63267936 ~ 63282972 (-) True epsti1
XM_036974895.1 mRNA downstream 102279 63267118 ~ 63282971 (-) False epsti1
XM_036974897.1 mRNA downstream 102283 63267118 ~ 63282967 (-) False epsti1
XM_036974893.1 mRNA downstream 102288 63267118 ~ 63282962 (-) False epsti1
XM_036974896.1 mRNA downstream 104294 63267118 ~ 63280956 (-) False epsti1
XM_036974900.1 mRNA upstream 142380 63527843 ~ 63532315 (-) False LOC110520372
XM_036974901.1 mRNA upstream 142380 63527843 ~ 63547249 (-) False LOC110520372
XM_021597639.2 mRNA upstream 142380 63527843 ~ 63601105 (-) True LOC110520372
XM_021597642.2 mRNA upstream 263712 63649175 ~ 63650920 (-) True LOC110520374
XM_036974902.1 mRNA upstream 274233 63659696 ~ 63661441 (-) True LOC118964309
TU322065 other downstream 670073 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 5796067 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 5981675 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 6087488 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 7973763 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 1584086 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 1628796 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 1669237 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 1669237 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 1849717 65235180 ~ 65235908 (-) True G286953

Expression Profile