RNA id: TU322944



Basic Information


Item Value
RNA id TU322944
length 232
lncRNA type intronic
GC content 0.52
exon number 1
gene id G284780
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63392096 ~ 63392327 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctgtaccttggccccacgtctctggattatcaacccctgcctgccttgacctgtcgtttgcctacCCCTGTTCttgcaataaacattgttacttcaacacagtctgcacttggatCTTACCAGAAACCTGatacaggtcacacatcttgctgctgggattgcacactgtggtatttcacccaatcaGTGGCGGCTGTAGGCATGGGCAGCCCCCTAGGACGGCATATTGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU322943 lncRNA downstream 697 63391044 ~ 63391399 (-) True G284779
TU322942 lncRNA downstream 2337 63389520 ~ 63389759 (-) True G284778
TU322939 lncRNA downstream 6633 63385250 ~ 63385463 (-) True G284775
TU322849 lncRNA downstream 74034 63317266 ~ 63318062 (-) True G284689
TU322889 lncRNA downstream 119488 63270467 ~ 63272608 (-) True G284729
TU322965 lncRNA upstream 22429 63414756 ~ 63457553 (-) True G284797
TU323020 lncRNA upstream 101743 63494070 ~ 63494497 (-) True G284848
TU323027 lncRNA upstream 106944 63499271 ~ 63499570 (-) True G284855
TU323035 lncRNA upstream 115259 63507586 ~ 63507794 (-) True G284861
TU323484 lncRNA upstream 129400 63521727 ~ 63522017 (-) True G285277
XM_036974894.1 mRNA downstream 109124 63267936 ~ 63282972 (-) True epsti1
XM_036974895.1 mRNA downstream 109125 63267118 ~ 63282971 (-) False epsti1
XM_036974897.1 mRNA downstream 109129 63267118 ~ 63282967 (-) False epsti1
XM_036974893.1 mRNA downstream 109134 63267118 ~ 63282962 (-) False epsti1
XM_036974896.1 mRNA downstream 111140 63267118 ~ 63280956 (-) False epsti1
XM_036974900.1 mRNA upstream 135516 63527843 ~ 63532315 (-) False LOC110520372
XM_036974901.1 mRNA upstream 135516 63527843 ~ 63547249 (-) False LOC110520372
XM_021597639.2 mRNA upstream 135516 63527843 ~ 63601105 (-) True LOC110520372
XM_021597642.2 mRNA upstream 256848 63649175 ~ 63650920 (-) True LOC110520374
XM_036974902.1 mRNA upstream 267369 63659696 ~ 63661441 (-) True LOC118964309
TU322065 other downstream 676919 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 5802913 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 5988521 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 6094334 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 7980609 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 1577222 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 1621932 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 1662373 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 1662373 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 1842853 65235180 ~ 65235908 (-) True G286953

Expression Profile