RNA id: TU323484


Basic Information

Item Value
RNA id TU323484
length 256
lncRNA type intronic
GC content 0.45
exon number 2
gene id G285277
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63521727 ~ 63522017 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccaggctcagtctgactgttttaaaccatgTTAGTCCAGGCTCAGTCTGACTGTTTCAAACCATGTTAGTCCAGGCtcagtctgactgttttaaaccttGTTAGTCCAGGCtcagtctgactgttttaaaccttGTTAGTCCAGGCTCAGTCTGACTGTTTCAAACCATGTTAGTCCAGGCTCAGTCTGACTGTTTCAAACCATGTTAGTCCAGGCtcagtctgactgttttaaaccatgttagtccaggctcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323035 lncRNA downstream 13933 63507586 ~ 63507794 (-) True G284861
TU323027 lncRNA downstream 22157 63499271 ~ 63499570 (-) True G284855
TU323020 lncRNA downstream 27230 63494070 ~ 63494497 (-) True G284848
TU322965 lncRNA downstream 64174 63414756 ~ 63457553 (-) True G284797
TU322944 lncRNA downstream 129400 63392096 ~ 63392327 (-) True G284780
TU323553 lncRNA upstream 126199 63648216 ~ 63660422 (-) True G285338
TU323638 lncRNA upstream 345166 63867183 ~ 63868625 (-) True LOC110520378
TU323688 lncRNA upstream 429440 63951457 ~ 63952165 (-) False G285444
TU323687 lncRNA upstream 429955 63951972 ~ 63953643 (-) True G285444
TU323689 lncRNA upstream 433393 63955410 ~ 63955880 (-) True G285445
XM_036974890.1 mRNA downstream 85315 63326306 ~ 63436412 (-) True LOC110520368
XM_036974888.1 mRNA downstream 85318 63319848 ~ 63436409 (-) False LOC110520368
XM_036974889.1 mRNA downstream 85318 63319848 ~ 63436409 (-) False LOC110520368
XM_036974894.1 mRNA downstream 238755 63267936 ~ 63282972 (-) True epsti1
XM_036974895.1 mRNA downstream 238756 63267118 ~ 63282971 (-) False epsti1
XM_036974900.1 mRNA upstream 5826 63527843 ~ 63532315 (-) False LOC110520372
XM_036974901.1 mRNA upstream 5826 63527843 ~ 63547249 (-) False LOC110520372
XM_021597639.2 mRNA upstream 5826 63527843 ~ 63601105 (-) True LOC110520372
XM_021597642.2 mRNA upstream 127158 63649175 ~ 63650920 (-) True LOC110520374
XM_036974902.1 mRNA upstream 137679 63659696 ~ 63661441 (-) True LOC118964309
TU322065 other downstream 806550 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 5932544 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 6118152 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 6223965 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 8110240 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 1447532 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 1492242 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 1532683 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 1532683 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 1713163 65235180 ~ 65235908 (-) True G286953

Expression Profile