RNA id: TU323553


Basic Information

Item Value
RNA id TU323553
length 1677
lncRNA type read_through
GC content 0.42
exon number 2
gene id G285338
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63648216 ~ 63660422 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATAGAGGGGaagactgggagagaggggggcaggtaCAGTAGGTAGTGAGGGAAACAAGAGGGAGACGAAGGgatgagggaaggagaaaggTGTCTGATTCCAGATTGACACCTAGCCCCTAGATTGAAACTGACGCAGGACAGTCATTTCTGTGCACTTTGTCTGGAGTCCAACCTCAGAGTCAAGAGAGAGATCATCCACCCTCACTGCTGCAGGACAGAACACAACCTCTCAGAGGACCAGTCCCCTACTGAATTACGCATACATAAGCTGCTGTTTCCATCCAGGCTGCTTCCCCTTCAAACCAGCCTTAGTGCACCGTGAGGTATTACATTGTGTGTTTTCGGTTGCTGTGTTTTGAGTGGAGTTGTGTGACCAAGCCTTTCTCTGGATTCTgaggggagaggtACAGTTGAACACTATACCTCTGACTGACTGTTGCTGATCATTGGACAAAAAAACTATTGTTTAATTGCAGTAACTTGCCTGACTAGATGGAAGGGAGGTCAGTGTGAATGCCCTGCAGCAGAGAAGCACAGAGAGTTTAGACCCAAAGGTTCAAATCTAGCATGATGCATGTGCAGTGAAGATTTTCAAATCAGACACCAACATTGTGATTGTAAGTGCTGTGAGTGAGTATGTGACAATGTGTGTTATTTTGGAAATGTGAATGTTTTGTTTCACACAAAATAAAAGTCATGAATATCGGCATGATTATATTATCTAATATTTTCCACAAGTCATGCTGGCATTTGTGTCTACtctattatatacagtacaaggGGACTTGTATATCATATTTAATTGCATCAACATTATGACAGTTGATTAAGGCAGACAGAGCTGACCATAGCGCTTTAATAGAATAGACTGGGAACTAATGTATCAGACGTAGAACTGTAACAGAGTTAGCTTAGTTAGTTAACTTAGAAAGTCAGCTTAGTGTACTGGAACATGCATCCGTGCCCAACATCCCAGAGCAGTCACCTCAAACCAAACATACAGATTTAGGATCTTAATCACCGTTGCAGAACCTTCTTTCATTCAGGAAAAGTAAAACATGAAGTGTATTTGAGGCTTAAAAAAAAGCTTCTGAAGTttataatttccactttgaaatttcagacttgtaTCAACCCgtacaaaaatgtaaattatttataatccatataataattcacatttcctgtttctaaaggattattttcctgctgtagcaaactggctcaaattaagatcctacatctgtaatgtAATAACCTACCAGGAGGGATCATAATCAAATCTGAACTCCTATATTAAATCTCTTTTCCCATTTCACTACATTTATcatttttttacattatttttatttaacctttatttaactgggcaagtcagttaagaacaaattcttatttacaatgacggccaaacccggccaaacctggatgacgctgggccaattgtgcaccgtcctatgggactcccaatcacggccagacaTGATACAggctggactcgaaccagggactgtaatgacgcctgaaatgcagtgctttagaccgctgcgccactcgggagcccaatgttATAAGCCAACATTTCATATAGGAAGTGATCACTGGTGAGTGAGGTTAGTGATTGACAGCTGTGCAGGTGTCTTCATCCCAGGGCCTCTAGGATTTATGCTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323484 lncRNA downstream 126199 63521727 ~ 63522017 (-) True G285277
TU323035 lncRNA downstream 140422 63507586 ~ 63507794 (-) True G284861
TU323027 lncRNA downstream 148646 63499271 ~ 63499570 (-) True G284855
TU323020 lncRNA downstream 153719 63494070 ~ 63494497 (-) True G284848
TU322965 lncRNA downstream 190663 63414756 ~ 63457553 (-) True G284797
TU323638 lncRNA upstream 206761 63867183 ~ 63868625 (-) True LOC110520378
TU323688 lncRNA upstream 291035 63951457 ~ 63952165 (-) False G285444
TU323687 lncRNA upstream 291550 63951972 ~ 63953643 (-) True G285444
TU323689 lncRNA upstream 294988 63955410 ~ 63955880 (-) True G285445
TU323711 lncRNA upstream 331692 63992114 ~ 63992941 (-) False G285466
XM_021597639.2 mRNA downstream 47111 63527843 ~ 63601105 (-) True LOC110520372
XM_036974901.1 mRNA downstream 100967 63527843 ~ 63547249 (-) False LOC110520372
XM_036974900.1 mRNA downstream 115901 63527843 ~ 63532315 (-) False LOC110520372
XM_036974890.1 mRNA downstream 211804 63326306 ~ 63436412 (-) True LOC110520368
XM_036974888.1 mRNA downstream 211807 63319848 ~ 63436409 (-) False LOC110520368
LOC110504432 mRNA upstream 22048 63682470 ~ 63688255 (-) True LOC110504432
LOC118964356 mRNA upstream 36591 63697013 ~ 63697211 (-) True LOC118964356
XM_036974903.1 mRNA upstream 46146 63706568 ~ 63710488 (-) True LOC118964310
LOC118964357 mRNA upstream 51017 63711439 ~ 63711637 (-) True LOC118964357
XM_021597643.2 mRNA upstream 60572 63720994 ~ 63742610 (-) True LOC110520375
TU322065 other downstream 933039 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 6059033 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 6244641 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 6350454 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 8236729 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 1309127 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 1353837 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 1394278 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 1394278 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 1574758 65235180 ~ 65235908 (-) True G286953

Expression Profile