RNA id: TU323149


Basic Information

Item Value
RNA id TU323149
length 1968
lncRNA type read_through
GC content 0.51
exon number 2
gene id G284968
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63648938 ~ 63661435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCCAGTACACTAAGCTGACTTTCTAAGTTAACTAACTAAGCTAACTCTGTTACAGTTCTACGTCTGATACATTAGTTCCCAGTCTATTCTATTAAAGCGCTATGGTCAGCTCTGTCTGCCTTAATCAACTGTCATAATGTTGATGCAATTAAATATGATATACAAGTCCccttgtactgtatataatagaGTAGACACAAATGCCAGCATGACTTGTGGAAAATATTAGATAATATAATCATGCCGATATTCATGACTTTTATTTTGTGTGAAACAAAACATTCACATTTCCAAAATAACACACATTGTCACATACTCACTCACAGCACTTACAATCACAATGTTGGTGTCTGATTTGAAAATCTTCACTGCACATGCATCATGCTAGATTTGAACCTTTGGGTCTAAACTCTCTGTGCTTCTCTGCTGCAGGGCATTCACACTGACCTCCCTTCCATCTAGTCAGGCAAGTTACTGCAATTAAACAATAGTTTTTTTGTCCAATGATCAGCAACAGTCAGTCAGAGGTATAGTGTTCAACTGTacctctcccctcAGAATCCAGAGAAAGGCTTGGTCACACAACTCCACTCAAAACACAGCAACCGAAAACACACAATGTAATACCTCACGGTGCACTAAGGCTGGTTTGAAGGGGAAGCAGCCTGGATGGAAACAGCAGCTTATGTATGCGTAATTCAGTAGGGGACTGGTCCTCTGAGAGGTTGTGTTCTGTCCTGCAGCAGTGAGGGTGGATGATCTCTCTCTTGACTCTGAGGTTGGACTCCAGACAAAGTGCACAGAAATGACTGTCCTGCGTCAGTTTCAATCTAGGGGCTAGGTGTCAATCTGGAATCAGACAcctttctccttccctcatcCCTTCGTCTCCCTCTTGTTTCCCTCACTACCTACTGtacctgcccccctctctcccagtcttCCCCTCTATCCACCTCCCTGTTCATTCCCTTCCTGATCCTGCTCCCCCATCTTTCCCTCTTCCCTgcctctccccaccctctcttaCTTGACAAAGTGCAGAGCCTCTGCGGCCACCACAGATCCCTTGCTGCTGTCCAGAGAGCTGATTAGAGAGAAGCCAGCCTTCAGGGCCAGCATCACCGTCTCTAGCTTCAGACACTCCAGGGTACACaggaaggtactgtcctgtttcAGCACCAGCCTGGAGCCAGGGTCCGACTTGATGAAGTGGCGGAACTGGATCACGTTGGACGACACCTCAAACTCCTCCGGGAAGCCGTCCAGTCGGCTCTTTGAGATCTGAACCAGGCGCCCTTTGATCTTGTCGATGAAGGAGGGGTCGCTGCAGTACACCTTGAAGCCCTGCGACCTCTCGTCAGTCACCTCCAGGAAGGCGGGCTCCCGTTGCGCCGCCCGCATCCCCTCCCACTCTGAAATAGCCTCCACCAATCCGCTGAGGCGGTAGAACTCTGCTTCTCCTCTCAGAAGGCCCACCTCTCGGAAGTCGTCGGGCAGCTGCAGGTCTCCGGTCCGCAGGAAGTTGAGGATGTGTCTGAACACGGGGCCGTCGCGGTCGATGAAGGGGTTGCCCATGGAGTCAGTGTGCTGGATGGGCTTCCTGCCGCTGGCCAGCTCCTCCAACACTGACCCCTGGTGGCGGCTGAGGGTGGTGCGGTGTGCGGCATAGAGAAAGCCCCCCACGTTGAGAGTGATGGTGCCTGAGGAGGGCTTCTTGATGCTCTTGCTGGGCTGCAGCAGGTCTGTGTTGATCTGTCTCAGTTCACTGTCCATCCTTCTGAGGTTCCATTCCATGCCGCTCCCGCTCAACAACCGCACAGtctttttgtctgtgtgtgtgtcctcaggatAAGTGTGTAGCGTGCAgtaacaaagtgtgtgtgtgtgtgttagcgtatGGGAGCGTCACGGAGAGGTACTGGCATAGAGAGGAGTGCAGAGCGCACtggtaacagaatgagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323048 lncRNA upstream 123223 63519786 ~ 63525715 (+) True serp2
TU323030 lncRNA upstream 147531 63501174 ~ 63501407 (+) True G284858
TU322802 lncRNA upstream 178301 63470356 ~ 63470637 (+) True G284646
TU322771 lncRNA upstream 191385 63414756 ~ 63457553 (+) True lacc1
TU322755 lncRNA upstream 257221 63391453 ~ 63391717 (+) True G284600
TU323156 lncRNA downstream 13796 63675231 ~ 63720212 (+) True G284975
TU323170 lncRNA downstream 45133 63706568 ~ 63722064 (+) False G284986
TU323171 lncRNA downstream 45133 63706568 ~ 63722064 (+) True G284986
TU323144 lncRNA downstream 68275 63729710 ~ 63734409 (+) True G284963
TU323189 lncRNA downstream 81571 63743006 ~ 63745493 (+) False G285001
XM_021597636.2 mRNA upstream 123168 63519804 ~ 63525770 (+) False serp2
XM_021597637.2 mRNA upstream 123168 63519824 ~ 63525770 (+) False serp2
XM_021597635.2 mRNA upstream 191367 63449360 ~ 63457571 (+) False lacc1
XM_021597631.2 mRNA upstream 414281 63225253 ~ 63234657 (+) False LOC110520367
XM_021597632.2 mRNA upstream 414281 63225255 ~ 63234657 (+) True LOC110520367
XR_005039920.1 mRNA downstream 226823 63888258 ~ 63889211 (+) True LOC118944562
XM_021583204.2 mRNA downstream 233230 63894665 ~ 63900193 (+) True LOC110504443
XM_021597663.2 mRNA downstream 311244 63972679 ~ 63974476 (+) True LOC110520383
XM_021597662.2 mRNA downstream 719156 64380591 ~ 64382791 (+) True LOC110520382
XM_036974921.1 mRNA downstream 1193305 64854740 ~ 64861974 (+) False zgc:152951
TU322754 other upstream 257654 63390931 ~ 63391284 (+) True G284599
TU322683 other upstream 336544 63267119 ~ 63312394 (+) False G284537
TU322474 other upstream 519980 63125890 ~ 63128958 (+) True LOC110520364
TU322433 other upstream 626347 63016326 ~ 63022591 (+) True G284313
TU321897 other upstream 941968 62706331 ~ 62706970 (+) True LOC110504398
TU323169 other downstream 45133 63706568 ~ 63722064 (+) False G284986
TU323188 other downstream 81571 63743006 ~ 63745493 (+) False G285001
TU323192 other downstream 81571 63743006 ~ 63745493 (+) True G285001
TU323408 other downstream 409997 64071432 ~ 64083982 (+) True G285203
TU324010 other downstream 645077 64306512 ~ 64307360 (+) True G285763

Expression Profile