RNA id: TU323156



Basic Information


Item Value
RNA id TU323156
length 652
lncRNA type read_through
GC content 0.45
exon number 2
gene id G284975
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63675231 ~ 63720212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtagaataatagttaagacatcaactataaaataacacatatggaatcatgtagtaaccaaaaaagtgtttctttaaagtagccaccctgtgccttgctgacagctgtgcacactcttggcattctttcaaccagcttcatgaggtatgcTTTTCCAACCTTctttcccacatatgttgagcacttgttggctgcttttccttcactccacggtccaactcatcctaaaccatctcaattgggttgaggtcgggtgattgtggaggccaggacatctgatgcagcactccatcactctccttcttggtcaaatagcccttacacagcctggaggtgttttgggtcattgtcctattgataaacaaatgatagtcccactaagcgcaaaccagatgggatggcgtatcgctgcagtatgctgtggtagctatgctggttaagtgtgccttgaattctaaacaaatcacagACGGTGTTAGCATTAAAGCACCTCacacatcacaccacctcctccatgcttcacagtgggaaccacacatgcagagatcatctgttcacctactctgcgtctcacaaagacatggcagtgggaaccaaaaatctcaaatttggactcatcagaccaaaggacagcttTCCAGTGgtctattgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU323149 lncRNA upstream 13796 63648938 ~ 63661435 (+) True G284968
TU323048 lncRNA upstream 149516 63519786 ~ 63525715 (+) True serp2
TU323030 lncRNA upstream 173824 63501174 ~ 63501407 (+) True G284858
TU322802 lncRNA upstream 204594 63470356 ~ 63470637 (+) True G284646
TU322771 lncRNA upstream 217678 63414756 ~ 63457553 (+) True lacc1
TU323144 lncRNA downstream 9498 63729710 ~ 63734409 (+) True G284963
TU323189 lncRNA downstream 22794 63743006 ~ 63745493 (+) False G285001
TU323274 lncRNA downstream 146971 63867183 ~ 63914056 (+) True G285077
TU323302 lncRNA downstream 181357 63901569 ~ 63902513 (+) True G285103
TU323355 lncRNA downstream 271921 63992133 ~ 63992935 (+) False G285155
XM_021597636.2 mRNA upstream 149461 63519804 ~ 63525770 (+) False serp2
XM_021597637.2 mRNA upstream 149461 63519824 ~ 63525770 (+) False serp2
XM_021597635.2 mRNA upstream 217660 63449360 ~ 63457571 (+) False lacc1
XM_021597631.2 mRNA upstream 440574 63225253 ~ 63234657 (+) False LOC110520367
XR_005039920.1 mRNA downstream 168046 63888258 ~ 63889211 (+) True LOC118944562
XM_021583204.2 mRNA downstream 174453 63894665 ~ 63900193 (+) True LOC110504443
XM_021597663.2 mRNA downstream 252467 63972679 ~ 63974476 (+) True LOC110520383
XM_021597662.2 mRNA downstream 660379 64380591 ~ 64382791 (+) True LOC110520382
XM_036974921.1 mRNA downstream 1134528 64854740 ~ 64861974 (+) False zgc:152951
TU322754 other upstream 283947 63390931 ~ 63391284 (+) True G284599
TU322683 other upstream 362837 63267119 ~ 63312394 (+) False G284537
TU322474 other upstream 546273 63125890 ~ 63128958 (+) True LOC110520364
TU322433 other upstream 652640 63016326 ~ 63022591 (+) True G284313
TU321897 other upstream 968261 62706331 ~ 62706970 (+) True LOC110504398
TU323188 other downstream 22794 63743006 ~ 63745493 (+) False G285001
TU323192 other downstream 22794 63743006 ~ 63745493 (+) True G285001
TU323408 other downstream 351220 64071432 ~ 64083982 (+) True G285203
TU324010 other downstream 586300 64306512 ~ 64307360 (+) True G285763
TU325026 other downstream 1389044 65109256 ~ 65109637 (+) True G286679

Expression Profile