RNA id: TCONS_00029459


Basic Information

Item Value
RNA id TCONS_00029459
length 1007
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_014934
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 34994433 ~ 34995629 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAAACCAACAAATATTTCAACAACCTTCTTTCAGCATGCAGGTCTGTTTTGATGTGGGCTATCCATAAGTAATCGCTCGCCGTTAACACCTTTTTTATGAATGGCACTTATTAATGGTCTCATTAGCACTTGTAGACCCACTGAAAGACACAGTCTGTATAAATGAAGCCTGTTTTTATCGGTCTTTCTGAGTTTGGATCTGAAGCTCATCATGACTAACGGAGAGACCGCAGAGTTCAGCAGTTTTCTGGCGCAGTCCAGTGGCGCTCCGAGAAGGAGATTGAAGCAGTGTGCAGCAGGAACATACACCGGGCTCATTGCATATGCAATTCAAGAATCACCGGACAAGAAGCTCACATTCAAAGAGATAATGACGAAGCTGGAACCATTTGTGTTTGGAGAAAAAAGGAGCATTGAGAACAACATCAGAGTCTGTCTATCGTCGAACAAGTGTTTTGTGAAGGTGCCAGTCGATCCAGATTATCCAAATCCCAAAAAGAATTACTGGAAAGTGGACGAAAATGGCATTACTCCAAAAATGCTCCGCCGACATTTCAAACACATTATGCACATGTTTCCTGGTCTTATGGCACGTGGAGATTATTCACGTGTTCATGATGACACACTCGTGCCAGTCTGCAAGGCTACAGAAAATAAAAGCGAAGTCAAGTTTACAGGCCCGTTCTCCATTGAATCTTTGCTAAAGAGTGACCATGGAGTGAAACGCATGCGCAGTACGCAGATGGAGGAACATCCACACTACAGAGAAGCGCAGTGTGCAGCGAcaaagagaaaacacatgtaTGCTGCAGTGGAGTGTTTTTACCCTGTTTCAGCAGAAGGAAACCACTTAGTCTCGACGAAAAGGCCTCGACTATCTTCAGGACCTCAGTTAGGACTGTTTTTCCTTCAGCAGATCCAGTATGATCGTACTCTCTTTAGCTCTCCTCTAATGTTCAATACATTTGTGAGCTGGTGAACAACGAGAAAGATCTTATGTAAATAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0001568 blood vessel development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-753 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus.

Ensembl:

ensembl_id ENSDART00000141704

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029458 lncRNA downstream 14609 34966757 ~ 34979824 (-) True XLOC_014933
TCONS_00030301 lncRNA downstream 306881 34660712 ~ 34687552 (-) False XLOC_014929
TCONS_00030302 lncRNA downstream 306881 34677004 ~ 34687552 (-) True XLOC_014929
TCONS_00030300 lncRNA downstream 306903 34660712 ~ 34687530 (-) False XLOC_014929
TCONS_00030299 lncRNA downstream 319557 34660712 ~ 34674876 (-) False XLOC_014929
TCONS_00029487 lncRNA upstream 1413365 36408994 ~ 36416038 (-) False XLOC_014947
TCONS_00030303 lncRNA upstream 1714869 36710498 ~ 36731093 (-) False XLOC_014948
TCONS_00030304 lncRNA upstream 1720517 36716146 ~ 36731093 (-) True XLOC_014948
TCONS_00030305 lncRNA upstream 1833322 36828951 ~ 36862051 (-) False XLOC_014949
TCONS_00030306 lncRNA upstream 1865947 36861576 ~ 36938485 (-) False XLOC_014949
TCONS_00029457 mRNA downstream 14596 34959967 ~ 34979837 (-) False XLOC_014933
TCONS_00029456 mRNA downstream 24121 34959967 ~ 34970312 (-) False XLOC_014933
TCONS_00029455 mRNA downstream 67232 34913855 ~ 34927201 (-) True XLOC_014932
TCONS_00029454 mRNA downstream 120867 34751687 ~ 34873566 (-) True XLOC_014931
TCONS_00029452 mRNA downstream 251993 34691645 ~ 34742440 (-) False XLOC_014930
TCONS_00029460 mRNA upstream 2400 34998029 ~ 34999379 (-) True XLOC_014935
TCONS_00029461 mRNA upstream 5624 35001253 ~ 35010342 (-) False XLOC_014936
TCONS_00029462 mRNA upstream 9516 35005145 ~ 35010226 (-) True XLOC_014936
TCONS_00029463 mRNA upstream 23675 35019304 ~ 35035857 (-) True XLOC_014937
TCONS_00029464 mRNA upstream 44273 35039902 ~ 35340027 (-) False XLOC_014938
TCONS_00029451 other downstream 898756 34092572 ~ 34095677 (-) True XLOC_014926
TCONS_00029449 other downstream 905128 34080946 ~ 34089305 (-) True XLOC_014925
TCONS_00029446 other downstream 1016439 33977878 ~ 33977994 (-) True XLOC_014924
TCONS_00029444 other downstream 1033707 33956826 ~ 33960726 (-) False XLOC_014923
TCONS_00029443 other downstream 1078569 33888604 ~ 33915864 (-) False XLOC_014923
TCONS_00029472 other upstream 425206 35420835 ~ 35420951 (-) True XLOC_014942
TCONS_00029473 other upstream 426048 35421677 ~ 35428894 (-) True XLOC_014941
TCONS_00029481 other upstream 466753 35462382 ~ 35465580 (-) True XLOC_014944
TCONS_00029490 other upstream 2232281 37227910 ~ 37228025 (-) True XLOC_014951
TCONS_00029492 other upstream 2641745 37637374 ~ 37637493 (-) True XLOC_014956

Expression Profile

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