RNA id: TU323189


Basic Information

Item Value
RNA id TU323189
length 2382
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G285001
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63743006 ~ 63745493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggatttttttattattcaGAAGTCAATAAGTTGAATATGATGACATTAGAAACAAACCAAAATTAAAGTAACAAGCATAAGGCGAACACTAATCAAGGCTTTGAATGTAGCATAGCATATTATATTGTAGTACGACAGAGGAAAAACAGGGTTTTAAAATTCCCATTTAGCAGTGGAATGTGGAATTGTATCACTCTATGCCAAACACATTTCTTCCAAGTAAAGTTTAACACCGCGGAAAACTAAAACTCTAAATTCATGTTTTCTACAGGGATAGAATGCTTCTCTCTAACCGGCAGATCTCTACTTCCTATGGAGCATCTAGATAGAAGTCACACTGCCATAAGAGGATAGCTGAGCTTACACCTAGgaaaaacacacattcacacatcttACAGTACTCATACATGCGCTTTCATCTAAAGTAAAAGGAAAAATTAACATTGCAGTTACAAGCAGATCCTAAATCAATGGAATTGTTTGTATCTGTTATGTTTATCCCCCCTTTTAAAAGACAATGTAATGCATGACATGTAAAGAATGGAGAAAAGTATTTTCCAGATATTATTTGATTCCATTACTGTTGATAAAAGTGGGTTATGTTTATTCTGAAAATACTgtcaaaaacatacaaacatctGTTATCCAAGTTTACAAAACACCCTTCAGTGACATAACGTCTTACATTTTTACTGTCTGTGTGATAAAAGCACAAAGGAAATGTAACAATTGTGAAATAATATGAATAGAACAATATAAACACCACACACAATGTTGTGGACACACAAAAAGCTCTATATGAGATATGCATACACGTGTCACCTTATTCAGTACTATCTTTGGATAATATTTCAATACATCCTGAAAAATGTACACAAACCTCTGGTACGAATCTGACTTCTCTATATGACCTCAACTGCTGGGATGGAGGCTACTCTCTCGCTCAAGAAGCTGCCTAGCAGATCTGGCTCAAATAGCACTGTACATACATTAGATACTTTAAAATACTTGACATGTTCTTGATTTAGCTTACCGGTATGCAGGGTGCCAAGAATTTGCACTTTTGGCACAATTCCAATCGTTCCAATTTACCATGCAACTCCTTTAAGatagttggaaaagcattcctcatgaagctggttgagagaatgccaagagtgtgcaaagctgccatcagggcaaagggtggctactttgaagaatctcaaatataaaatatattttcatttgtttaacacttttttgggttactacatgattccatgtgttatttcagagttgatgtctttactattattctacaatgtagaaaatagtaaaaataaagaaaaaccatggaatgagtaggtgtgtccaaacttttgactggtactctctACTCTGGTACTCTCAACCCAGTTCTGCTGCACAGTAATGTGATTGAGAGTAGCATCAGTAACATAGCCcaggtgtctgtctgtttggcatgacaatgataAAGTAGTTGGCTAAGGCAGAAACAGACCAGCACACTGGCAGTAACAACCTTATCAATACTCTTCATTCTTATGATGAAATACCAGGACACTGATGCATACTTAAATAAACAAGTTGGGTTTTGAAGTGACATTTTAAGCTAAAATAACAATTAAATATATGATATTAGCATCAAGGATAAATATGAATATAATATGAATATGTCTTTAGACAAAGGCACTGATTTGGCGAGGACTCTTCTTTGTGTACTGTCGGTCTCTCTGCTCATGGGTTGTCACTATTTGGCCAAGCATGAAAAGATTGAAGGAAACTGCAAATGTAATTTATCAACAAcataaccctaatccctaaccttaCACCAAGAACAAATAGCTCATGTGGTTGCTCAAACATTCTGATGATATCACTTTTGTCCATTCTAGCATGGCCATCTAGTGACTATAGGCTTCcggtctgtctgggtctgtctgtcagtctgtctgggtctgtctgtcagtttgtctgggtctgtctgtctgggtctgtctgtcagtctgtctgggtctgtctgtcagtctgtctgggtctgtcgGTCAGCCTCTCTCGGTCAGTCTCTCTCGGTCAGTCTCTCTCGGTCAGTCTCTCTCGGTCAGTCTCTCTCGGTCAGTCTCTCTCGGTCAGTCTCTCTCGGTCAGTCTGTGTCTACTTCCGGCCCACCGTCTCCGCCAGCTTCTTCAGCCTCTTCTTAAGTTCCAGAGGAAACTTCTCGTAACACTTCTTACACACCGGCTTCATGTCAAACTCCACAAACTTGTTCCTATAAGGGAGAGACAAAGATACTGTATGAGCAGGGTTCTGACTTTCATTGATCTATATCAAGAggtgaaggtgaaataaaaagagTCCTACACTCCAGCACTActttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323144 lncRNA upstream 8597 63729710 ~ 63734409 (+) True G284963
TU323170 lncRNA upstream 20942 63706568 ~ 63722064 (+) False G284986
TU323171 lncRNA upstream 20942 63706568 ~ 63722064 (+) True G284986
TU323156 lncRNA upstream 22794 63675231 ~ 63720212 (+) True G284975
TU323149 lncRNA upstream 81571 63648938 ~ 63661435 (+) True G284968
TU323274 lncRNA downstream 121690 63867183 ~ 63914056 (+) True G285077
TU323302 lncRNA downstream 156076 63901569 ~ 63902513 (+) True G285103
TU323355 lncRNA downstream 246640 63992133 ~ 63992935 (+) False G285155
TU323356 lncRNA downstream 247105 63992598 ~ 63992935 (+) True G285155
TU323376 lncRNA downstream 283813 64029306 ~ 64070900 (+) True G285172
XM_021597641.2 mRNA upstream 60764 63625840 ~ 63682242 (+) False gtf2f2b
XM_021597640.2 mRNA upstream 60764 63626178 ~ 63682242 (+) True gtf2f2b
XM_021597636.2 mRNA upstream 217236 63519804 ~ 63525770 (+) False serp2
XM_021597637.2 mRNA upstream 217236 63519824 ~ 63525770 (+) False serp2
XM_021597635.2 mRNA upstream 285435 63449360 ~ 63457571 (+) False lacc1
XR_005039920.1 mRNA downstream 142765 63888258 ~ 63889211 (+) True LOC118944562
XM_021583204.2 mRNA downstream 149172 63894665 ~ 63900193 (+) True LOC110504443
XM_021597663.2 mRNA downstream 227186 63972679 ~ 63974476 (+) True LOC110520383
XM_021597662.2 mRNA downstream 635098 64380591 ~ 64382791 (+) True LOC110520382
XM_036974921.1 mRNA downstream 1109247 64854740 ~ 64861974 (+) False zgc:152951
TU323169 other upstream 20942 63706568 ~ 63722064 (+) False G284986
TU322754 other upstream 351722 63390931 ~ 63391284 (+) True G284599
TU322683 other upstream 430612 63267119 ~ 63312394 (+) False G284537
TU322474 other upstream 614048 63125890 ~ 63128958 (+) True LOC110520364
TU322433 other upstream 720415 63016326 ~ 63022591 (+) True G284313
TU323408 other downstream 325939 64071432 ~ 64083982 (+) True G285203
TU324010 other downstream 561019 64306512 ~ 64307360 (+) True G285763
TU325026 other downstream 1363763 65109256 ~ 65109637 (+) True G286679
TU325057 other downstream 1415898 65161391 ~ 65166580 (+) True LOC110520396
TU325080 other downstream 1514952 65260445 ~ 65285556 (+) True zmym2

Expression Profile