RNA id: TU323408


Basic Information

Item Value
RNA id TU323408
length 299
RNA type TUCP
GC content 0.41
exon number 2
gene id G285203
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64071432 ~ 64083982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaaggatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgaaaaactgatagacatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323376 lncRNA upstream 532 64029306 ~ 64070900 (+) True G285172
TU323355 lncRNA upstream 78497 63992133 ~ 63992935 (+) False G285155
TU323356 lncRNA upstream 78497 63992598 ~ 63992935 (+) True G285155
TU323274 lncRNA upstream 157376 63867183 ~ 63914056 (+) True G285077
TU323302 lncRNA upstream 168919 63901569 ~ 63902513 (+) True G285103
TU323827 lncRNA downstream 90748 64174730 ~ 64175088 (+) True G285581
TU323829 lncRNA downstream 91789 64175771 ~ 64175973 (+) True G285583
TU323897 lncRNA downstream 146902 64230884 ~ 64231337 (+) True G285651
TU323937 lncRNA downstream 180572 64264554 ~ 64264764 (+) True G285691
TU323963 lncRNA downstream 194968 64278950 ~ 64279921 (+) True G285717
XM_021597663.2 mRNA upstream 96956 63972679 ~ 63974476 (+) True LOC110520383
XM_021583204.2 mRNA upstream 171239 63894665 ~ 63900193 (+) True LOC110504443
XR_005039920.1 mRNA upstream 182221 63888258 ~ 63889211 (+) True LOC118944562
XM_021597641.2 mRNA upstream 389190 63625840 ~ 63682242 (+) False gtf2f2b
XM_021597640.2 mRNA upstream 389190 63626178 ~ 63682242 (+) True gtf2f2b
XM_021597662.2 mRNA downstream 296609 64380591 ~ 64382791 (+) True LOC110520382
XM_036974921.1 mRNA downstream 770758 64854740 ~ 64861974 (+) False zgc:152951
XM_036974919.1 mRNA downstream 770760 64854742 ~ 64861974 (+) False zgc:152951
XM_021597671.2 mRNA downstream 770917 64854899 ~ 64861974 (+) False zgc:152951
XM_036974920.1 mRNA downstream 771248 64855230 ~ 64861974 (+) False zgc:152951
TU323188 other upstream 325939 63743006 ~ 63745493 (+) False G285001
TU323192 other upstream 325939 63743006 ~ 63745493 (+) True G285001
TU323169 other upstream 349368 63706568 ~ 63722064 (+) False G284986
TU322754 other upstream 680148 63390931 ~ 63391284 (+) True G284599
TU322683 other upstream 759038 63267119 ~ 63312394 (+) False G284537
TU324010 other downstream 222530 64306512 ~ 64307360 (+) True G285763
TU325026 other downstream 1025274 65109256 ~ 65109637 (+) True G286679
TU325057 other downstream 1077409 65161391 ~ 65166580 (+) True LOC110520396
TU325080 other downstream 1176463 65260445 ~ 65285556 (+) True zmym2
TU325972 other downstream 1950438 66034420 ~ 66036202 (+) True LOC118964312

Expression Profile