RNA id: TU323870



Basic Information


Item Value
RNA id TU323870
length 304
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G285624
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64211086 ~ 64211389 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtcacaccctgatctgtttcacctgtccttgtgattgtcttcaccccctccaggtgtcgcttgtttccccagtgtatttatccctgtgtttcctgtctctctgtgccagtgtaatTATCCCtgtctttcctgtctctctgtgccagtatATTTATCCCtgtctttcctgtctctctgtgccagtgtactTATCCcggtgtttcctgtctctctgtgccagtgtatttatcccagtgtttcctgtctctctgtgccagtgtatttatccctgtgtttcctgtctctctgtgccagtgtaatTATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU323828 lncRNA downstream 35978 64174887 ~ 64175108 (-) True G285582
TU323711 lncRNA downstream 218145 63992114 ~ 63992941 (-) False G285466
TU323710 lncRNA downstream 218145 63992598 ~ 63992941 (-) True G285466
TU323689 lncRNA downstream 255206 63955410 ~ 63955880 (-) True G285445
TU323687 lncRNA downstream 257443 63951972 ~ 63953643 (-) True G285444
TU323875 lncRNA upstream 2641 64214030 ~ 64214339 (-) True G285629
TU323924 lncRNA upstream 43244 64254633 ~ 64254876 (-) True G285678
TU323929 lncRNA upstream 49626 64261015 ~ 64261242 (-) True G285683
TU323938 lncRNA upstream 53264 64264653 ~ 64264909 (-) True G285692
TU323942 lncRNA upstream 54409 64265798 ~ 64266001 (-) True G285696
XM_036974914.1 mRNA downstream 36810 63911999 ~ 64174276 (-) True LOC110520380
XM_036964596.1 mRNA downstream 306868 63901468 ~ 63904218 (-) False LOC110505395
XM_036964597.1 mRNA downstream 306868 63901468 ~ 63904218 (-) True LOC110505395
XM_036964580.1 mRNA downstream 306872 63901468 ~ 63904214 (-) False LOC110505395
XM_036964595.1 mRNA downstream 306873 63901468 ~ 63904213 (-) False LOC110505395
XM_036974916.1 mRNA upstream 274400 64485789 ~ 64641565 (-) False LOC110520379
XM_036974917.1 mRNA upstream 274400 64485789 ~ 64641565 (-) False LOC110520379
XM_021597673.2 mRNA upstream 641114 64852503 ~ 64855851 (-) True LOC110520388
XM_021597667.2 mRNA upstream 650637 64862026 ~ 64883035 (-) False LOC110520386
XM_021597666.2 mRNA upstream 650637 64862026 ~ 64890987 (-) False LOC110520386
TU322065 other downstream 1495909 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 6621903 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 6807511 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 6913324 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 8799599 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 758160 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 802870 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 843311 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 843311 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 1023791 65235180 ~ 65235908 (-) True G286953

Expression Profile