RNA id: TCONS_00029462


Basic Information

Item Value
RNA id TCONS_00029462
length 877
RNA type mRNA
GC content 0.44
exon number 8
gene id XLOC_014936
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 35001253 ~ 35010342 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTATTTAAACCGTTTCCGTAGCAAAAAGGCAAAAATGGCAGAACGAGGATACAGTTTTTCTCTCACAACATTTAGCCCGTCTGGCAAACTGGTGCAGATTGAATATGCTCTGGCCGCAGTAGCAGCTGGTGCCCCGTCTGTAGGAATCAAAGCATCAAATGGAGTTGTGCTGGCAACAGAGAAGAAACAAAAGTCCATACTGTACGATGAACAGAGCGTGCACAAAGTTGAACCGATAACCAAACACATTGGCATGGTGTACAGTGGAATGGGCCCCGATTACAGGGTGCTGGTCAGAAGGGCAAGAAAGCTGGCTCAGCAGTATTTCCTGGTCTATCAAGAGCCGATCCCCACAGGCCAGCTGGTACAGAGAGTGGCTTCTGTCATGCAAGAATACACACAGTCAGGAGGTGTACGCCCATTTGGAGTGTCTCTCCTTATCGCTGGTTGGGACGAAGACAGACCATACTTATTTCAGTCAGACCCATcgGGAGCATACTTCGCTTGGAAAGCCACAGCAATGGGAAAGAACTATGTGAATGGAAAAACGTTCCTTGAAAAAAGATATAATGAAGATCTGGAACTTGAAGATGCTATACACACTGCCATCTTAACTTTGAAGGCGATTTTGAAGGTCAGATGACAGAAGACAACATTGAGGTGGGCATTTGTAATGAAGCAGGGTTTCGCAGACTGTCGCCCGCTGAGGTGAAGGATTACCTGGCAGCAATTGCTTAAAAACTACAGCACTACAACTGCTTACACAGTTTCGCATTTCggtttggttgtttgtttaaattctgcaTTTTTATTATCTGTACATCTGTGTAACTGAtttctttataaaaataatacacatCCTCGACAAATGACAA

Function

GO:

id name namespace
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-941 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome core complex, alpha-subunit complex. Orthologous to human PSMA2 (proteasome 20S subunit alpha 2).

Ensembl:

ensembl_id ENSDART00000051750

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029458 lncRNA downstream 25321 34966757 ~ 34979824 (-) True XLOC_014933
TCONS_00030301 lncRNA downstream 317593 34660712 ~ 34687552 (-) False XLOC_014929
TCONS_00030302 lncRNA downstream 317593 34677004 ~ 34687552 (-) True XLOC_014929
TCONS_00030300 lncRNA downstream 317615 34660712 ~ 34687530 (-) False XLOC_014929
TCONS_00030299 lncRNA downstream 330269 34660712 ~ 34674876 (-) False XLOC_014929
TCONS_00029487 lncRNA upstream 1398768 36408994 ~ 36416038 (-) False XLOC_014947
TCONS_00030303 lncRNA upstream 1700272 36710498 ~ 36731093 (-) False XLOC_014948
TCONS_00030304 lncRNA upstream 1705920 36716146 ~ 36731093 (-) True XLOC_014948
TCONS_00030305 lncRNA upstream 1818725 36828951 ~ 36862051 (-) False XLOC_014949
TCONS_00030306 lncRNA upstream 1851350 36861576 ~ 36938485 (-) False XLOC_014949
TCONS_00029460 mRNA downstream 5766 34998029 ~ 34999379 (-) True XLOC_014935
TCONS_00029459 mRNA downstream 9516 34994433 ~ 34995629 (-) True XLOC_014934
TCONS_00029457 mRNA downstream 25308 34959967 ~ 34979837 (-) False XLOC_014933
TCONS_00029456 mRNA downstream 34833 34959967 ~ 34970312 (-) False XLOC_014933
TCONS_00029455 mRNA downstream 77944 34913855 ~ 34927201 (-) True XLOC_014932
TCONS_00029463 mRNA upstream 9078 35019304 ~ 35035857 (-) True XLOC_014937
TCONS_00029464 mRNA upstream 29676 35039902 ~ 35340027 (-) False XLOC_014938
TCONS_00029465 mRNA upstream 30765 35040991 ~ 35052451 (-) False XLOC_014938
TCONS_00029466 mRNA upstream 31019 35041245 ~ 35229336 (-) False XLOC_014938
TCONS_00029467 mRNA upstream 129107 35139333 ~ 35155722 (-) True XLOC_014938
TCONS_00029451 other downstream 909468 34092572 ~ 34095677 (-) True XLOC_014926
TCONS_00029449 other downstream 915840 34080946 ~ 34089305 (-) True XLOC_014925
TCONS_00029446 other downstream 1027151 33977878 ~ 33977994 (-) True XLOC_014924
TCONS_00029444 other downstream 1044419 33956826 ~ 33960726 (-) False XLOC_014923
TCONS_00029443 other downstream 1089281 33888604 ~ 33915864 (-) False XLOC_014923
TCONS_00029472 other upstream 410609 35420835 ~ 35420951 (-) True XLOC_014942
TCONS_00029473 other upstream 411451 35421677 ~ 35428894 (-) True XLOC_014941
TCONS_00029481 other upstream 452156 35462382 ~ 35465580 (-) True XLOC_014944
TCONS_00029490 other upstream 2217684 37227910 ~ 37228025 (-) True XLOC_014951
TCONS_00029492 other upstream 2627148 37637374 ~ 37637493 (-) True XLOC_014956

Expression Profile

//