RNA id: TU324004



Basic Information


Item Value
RNA id TU324004
length 226
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G285758
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64303532 ~ 64303757 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atttagtagtggtttctttgcagcaattcgaccatgaaggccagattcacaaagtctcctctgaaccgttgatgttgagatgtgtctgttacctgaactctatgaagcatttatttggattgcaaattctaaggctggtaactttaatgaatgtatcctctgcagcagaggtaactctgggtcttccttaccTTTTGATTactaacaatgacgagacggcctacag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU323986 lncRNA downstream 10804 64292351 ~ 64292728 (-) True G285740
TU323979 lncRNA downstream 14067 64289223 ~ 64289465 (-) True G285733
TU323966 lncRNA downstream 23601 64279643 ~ 64279931 (-) True G285720
TU323965 lncRNA downstream 23975 64279317 ~ 64279557 (-) True G285719
TU323959 lncRNA downstream 26558 64276604 ~ 64276974 (-) True G285713
TU324029 lncRNA upstream 15158 64318915 ~ 64319128 (-) True G285782
TU324036 lncRNA upstream 22895 64326652 ~ 64326972 (-) True G285789
TU324051 lncRNA upstream 32381 64336138 ~ 64336339 (-) True G285804
TU324085 lncRNA upstream 57715 64361472 ~ 64361871 (-) True G285837
TU324090 lncRNA upstream 65415 64369172 ~ 64369482 (-) True G285842
XM_036974914.1 mRNA downstream 129256 63911999 ~ 64174276 (-) True LOC110520380
XM_036964596.1 mRNA downstream 399314 63901468 ~ 63904218 (-) False LOC110505395
XM_036964597.1 mRNA downstream 399314 63901468 ~ 63904218 (-) True LOC110505395
XM_036964580.1 mRNA downstream 399318 63901468 ~ 63904214 (-) False LOC110505395
XM_036964595.1 mRNA downstream 399319 63901468 ~ 63904213 (-) False LOC110505395
XM_036974916.1 mRNA upstream 182032 64485789 ~ 64641565 (-) False LOC110520379
XM_036974917.1 mRNA upstream 182032 64485789 ~ 64641565 (-) False LOC110520379
XM_021597673.2 mRNA upstream 548746 64852503 ~ 64855851 (-) True LOC110520388
XM_021597667.2 mRNA upstream 558269 64862026 ~ 64883035 (-) False LOC110520386
XM_021597666.2 mRNA upstream 558269 64862026 ~ 64890987 (-) False LOC110520386
TU322065 other downstream 1588355 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 6714349 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 6899957 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 7005770 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 8892045 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 665792 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 710502 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 750943 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 750943 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 931423 65235180 ~ 65235908 (-) True G286953

Expression Profile