RNA id: TU324066


Basic Information

Item Value
RNA id TU324066
length 278
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G285818
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64363210 ~ 64363487 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacatatggaatcatgtagtaagtaaagtgttaaacaaatcaaaatatattttatatttgagattcttcaacttagccaccctttgacttgatgactactttgcacactcttggcattatggacagtacagtatgtgaatagaaaaggtgtgtacagcagtagtaaTAAACTGAAAAACAATTTCAAAAGATTTTACTAAGTTTACTAAGATTttacacagatcttcattgtaaagggtttaaacaatgTTCCCCATGCTTGtgaataaacaattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324075 lncRNA upstream 2323 64360618 ~ 64360887 (+) True G285827
TU324059 lncRNA upstream 17296 64345540 ~ 64345914 (+) True G285811
TU324056 lncRNA upstream 19146 64339196 ~ 64344064 (+) True G285808
TU324030 lncRNA upstream 42218 64320737 ~ 64320992 (+) True G285783
TU324028 lncRNA upstream 44465 64318536 ~ 64318745 (+) True G285781
TU324086 lncRNA downstream 887 64364374 ~ 64364641 (+) True G285838
TU324111 lncRNA downstream 19573 64383060 ~ 64383415 (+) True G285862
TU324114 lncRNA downstream 20727 64384214 ~ 64384553 (+) True G285865
TU324115 lncRNA downstream 21316 64384803 ~ 64385072 (+) True G285866
TU324153 lncRNA downstream 71787 64435274 ~ 64435482 (+) True G285903
XM_021597663.2 mRNA upstream 388734 63972679 ~ 63974476 (+) True LOC110520383
XM_021583204.2 mRNA upstream 463017 63894665 ~ 63900193 (+) True LOC110504443
XR_005039920.1 mRNA upstream 473999 63888258 ~ 63889211 (+) True LOC118944562
XM_021597641.2 mRNA upstream 680968 63625840 ~ 63682242 (+) False gtf2f2b
XM_021597662.2 mRNA downstream 17104 64380591 ~ 64382791 (+) True LOC110520382
XM_036974921.1 mRNA downstream 491253 64854740 ~ 64861974 (+) False zgc:152951
XM_036974919.1 mRNA downstream 491255 64854742 ~ 64861974 (+) False zgc:152951
XM_021597671.2 mRNA downstream 491412 64854899 ~ 64861974 (+) False zgc:152951
XM_036974920.1 mRNA downstream 491743 64855230 ~ 64861974 (+) False zgc:152951
TU324010 other upstream 55850 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 279228 64071432 ~ 64083982 (+) True G285203
TU323188 other upstream 617717 63743006 ~ 63745493 (+) False G285001
TU323192 other upstream 617717 63743006 ~ 63745493 (+) True G285001
TU323169 other upstream 641146 63706568 ~ 63722064 (+) False G284986
TU325026 other downstream 745769 65109256 ~ 65109637 (+) True G286679
TU325057 other downstream 797904 65161391 ~ 65166580 (+) True LOC110520396
TU325080 other downstream 896958 65260445 ~ 65285556 (+) True zmym2
TU325972 other downstream 1670933 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 2186335 66549822 ~ 66550487 (+) True G288252

Expression Profile