RNA id: TU324153



Basic Information


Item Value
RNA id TU324153
length 209
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G285903
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64435274 ~ 64435482 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctataaaaatcctacaatgtgattttctggatttttttctaattttgtctgtcatagttgaagtgtacctatgatgaaaattacaggcctctctcatcttcttaagtgggagaacttgcacaattggtggttgactaaatacttttttgccccaatgtatatttacaacggtgtttgttcttcactggttgcccttttcttgtggcaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU324115 lncRNA upstream 50202 64384803 ~ 64385072 (+) True G285866
TU324114 lncRNA upstream 50721 64384214 ~ 64384553 (+) True G285865
TU324111 lncRNA upstream 51859 64383060 ~ 64383415 (+) True G285862
TU324086 lncRNA upstream 70633 64364374 ~ 64364641 (+) True G285838
TU324066 lncRNA upstream 71787 64363210 ~ 64363487 (+) True G285818
TU324155 lncRNA downstream 2774 64438256 ~ 64438605 (+) True G285905
TU324157 lncRNA downstream 4205 64439687 ~ 64439886 (+) True G285907
TU324162 lncRNA downstream 10838 64446320 ~ 64446648 (+) True G285912
TU324170 lncRNA downstream 23088 64458570 ~ 64458815 (+) True G285920
TU324182 lncRNA downstream 48337 64483819 ~ 64484195 (+) True G285932
XM_021597662.2 mRNA upstream 52483 64380591 ~ 64382791 (+) True LOC110520382
XM_021597663.2 mRNA upstream 460798 63972679 ~ 63974476 (+) True LOC110520383
XM_021583204.2 mRNA upstream 535081 63894665 ~ 63900193 (+) True LOC110504443
XR_005039920.1 mRNA upstream 546063 63888258 ~ 63889211 (+) True LOC118944562
XM_021597640.2 mRNA upstream 753032 63626178 ~ 63682242 (+) True gtf2f2b
XM_036974921.1 mRNA downstream 419258 64854740 ~ 64861974 (+) False zgc:152951
XM_036974919.1 mRNA downstream 419260 64854742 ~ 64861974 (+) False zgc:152951
XM_021597671.2 mRNA downstream 419417 64854899 ~ 64861974 (+) False zgc:152951
XM_036974920.1 mRNA downstream 419748 64855230 ~ 64861974 (+) False zgc:152951
XM_021597670.2 mRNA downstream 420376 64855858 ~ 64861974 (+) True zgc:152951
TU324010 other upstream 127914 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 351292 64071432 ~ 64083982 (+) True G285203
TU323188 other upstream 689781 63743006 ~ 63745493 (+) False G285001
TU323192 other upstream 689781 63743006 ~ 63745493 (+) True G285001
TU323169 other upstream 713210 63706568 ~ 63722064 (+) False G284986
TU325026 other downstream 673774 65109256 ~ 65109637 (+) True G286679
TU325057 other downstream 725909 65161391 ~ 65166580 (+) True LOC110520396
TU325080 other downstream 824963 65260445 ~ 65285556 (+) True zmym2
TU325972 other downstream 1598938 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 2114340 66549822 ~ 66550487 (+) True G288252

Expression Profile