Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00029465 |
| length | 898 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 4 |
| gene id | XLOC_014938 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 35039902 ~ 35340027 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0009798 | axis specification | biological_process |
| GO:0045104 | intermediate filament cytoskeleton organization | biological_process |
| GO:0032886 | regulation of microtubule-based process | biological_process |
| GO:0007010 | cytoskeleton organization | biological_process |
| GO:0051893 | regulation of focal adhesion assembly | biological_process |
| GO:0060832 | oocyte animal/vegetal axis specification | biological_process |
| GO:0042060 | wound healing | biological_process |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005874 | microtubule | cellular_component |
| GO:0005882 | intermediate filament | cellular_component |
| GO:0015629 | actin cytoskeleton | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0005198 | structural molecule activity | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| GO:0008017 | microtubule binding | molecular_function |
| GO:0008092 | cytoskeletal protein binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-3606 | Predicted to enable structural molecule activity. Involved in organelle disassembly. Acts upstream of or within oocyte animal/vegetal axis specification. Located in cell cortex and mitochondrial cloud. Is expressed in hair cell anterior macula; inner ear; macula; oocyte stage I; and posterior crista. Human ortholog(s) of this gene implicated in lissencephaly 9 with complex brainstem malformation. Orthologous to human MACF1 (microtubule actin crosslinking factor 1). |
| ensembl_id | ENSDART00000152030 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00029458 | lncRNA | downstream | 61167 | 34966757 ~ 34979824 (-) | True | XLOC_014933 |
| TCONS_00030301 | lncRNA | downstream | 353439 | 34660712 ~ 34687552 (-) | False | XLOC_014929 |
| TCONS_00030302 | lncRNA | downstream | 353439 | 34677004 ~ 34687552 (-) | True | XLOC_014929 |
| TCONS_00030300 | lncRNA | downstream | 353461 | 34660712 ~ 34687530 (-) | False | XLOC_014929 |
| TCONS_00030299 | lncRNA | downstream | 366115 | 34660712 ~ 34674876 (-) | False | XLOC_014929 |
| TCONS_00029487 | lncRNA | upstream | 1356543 | 36408994 ~ 36416038 (-) | False | XLOC_014947 |
| TCONS_00030303 | lncRNA | upstream | 1658047 | 36710498 ~ 36731093 (-) | False | XLOC_014948 |
| TCONS_00030304 | lncRNA | upstream | 1663695 | 36716146 ~ 36731093 (-) | True | XLOC_014948 |
| TCONS_00030305 | lncRNA | upstream | 1776500 | 36828951 ~ 36862051 (-) | False | XLOC_014949 |
| TCONS_00030306 | lncRNA | upstream | 1809125 | 36861576 ~ 36938485 (-) | False | XLOC_014949 |
| TCONS_00029463 | mRNA | downstream | 5134 | 35019304 ~ 35035857 (-) | True | XLOC_014937 |
| TCONS_00029461 | mRNA | downstream | 30649 | 35001253 ~ 35010342 (-) | False | XLOC_014936 |
| TCONS_00029462 | mRNA | downstream | 30765 | 35005145 ~ 35010226 (-) | True | XLOC_014936 |
| TCONS_00029460 | mRNA | downstream | 41612 | 34998029 ~ 34999379 (-) | True | XLOC_014935 |
| TCONS_00029459 | mRNA | downstream | 45362 | 34994433 ~ 34995629 (-) | True | XLOC_014934 |
| TCONS_00029467 | mRNA | upstream | 86882 | 35139333 ~ 35155722 (-) | True | XLOC_014938 |
| TCONS_00029468 | mRNA | upstream | 304745 | 35357196 ~ 35361556 (-) | True | XLOC_014939 |
| TCONS_00029469 | mRNA | upstream | 327448 | 35379899 ~ 35400819 (-) | True | XLOC_014940 |
| TCONS_00029470 | mRNA | upstream | 366232 | 35418683 ~ 35428914 (-) | False | XLOC_014941 |
| TCONS_00029471 | mRNA | upstream | 366281 | 35418732 ~ 35428815 (-) | False | XLOC_014941 |
| TCONS_00029451 | other | downstream | 945314 | 34092572 ~ 34095677 (-) | True | XLOC_014926 |
| TCONS_00029449 | other | downstream | 951686 | 34080946 ~ 34089305 (-) | True | XLOC_014925 |
| TCONS_00029446 | other | downstream | 1062997 | 33977878 ~ 33977994 (-) | True | XLOC_014924 |
| TCONS_00029444 | other | downstream | 1080265 | 33956826 ~ 33960726 (-) | False | XLOC_014923 |
| TCONS_00029443 | other | downstream | 1125127 | 33888604 ~ 33915864 (-) | False | XLOC_014923 |
| TCONS_00029472 | other | upstream | 368384 | 35420835 ~ 35420951 (-) | True | XLOC_014942 |
| TCONS_00029473 | other | upstream | 369226 | 35421677 ~ 35428894 (-) | True | XLOC_014941 |
| TCONS_00029481 | other | upstream | 409931 | 35462382 ~ 35465580 (-) | True | XLOC_014944 |
| TCONS_00029490 | other | upstream | 2175459 | 37227910 ~ 37228025 (-) | True | XLOC_014951 |
| TCONS_00029492 | other | upstream | 2584923 | 37637374 ~ 37637493 (-) | True | XLOC_014956 |
