RNA id: TU324157



Basic Information


Item Value
RNA id TU324157
length 200
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G285907
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64439687 ~ 64439886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAAAAATGGCAGCTGGTGCTCTGGactgatgagtcaaaatgtgaAATATTTAGCTATAGCAGAAggctggaataccgacataatctgcccgaggattccaacaggcccctcaggcgcgacgcccgcagaaggcccattctgctaacctgctaggcctgctagctacctagagctacttggaaccctactaattccacgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU324155 lncRNA upstream 1082 64438256 ~ 64438605 (+) True G285905
TU324153 lncRNA upstream 4205 64435274 ~ 64435482 (+) True G285903
TU324115 lncRNA upstream 54615 64384803 ~ 64385072 (+) True G285866
TU324114 lncRNA upstream 55134 64384214 ~ 64384553 (+) True G285865
TU324111 lncRNA upstream 56272 64383060 ~ 64383415 (+) True G285862
TU324162 lncRNA downstream 6434 64446320 ~ 64446648 (+) True G285912
TU324170 lncRNA downstream 18684 64458570 ~ 64458815 (+) True G285920
TU324182 lncRNA downstream 43933 64483819 ~ 64484195 (+) True G285932
TU324186 lncRNA downstream 51482 64491368 ~ 64491633 (+) True G285936
TU324194 lncRNA downstream 62619 64502505 ~ 64503428 (+) True G285943
XM_021597662.2 mRNA upstream 56896 64380591 ~ 64382791 (+) True LOC110520382
XM_021597663.2 mRNA upstream 465211 63972679 ~ 63974476 (+) True LOC110520383
XM_021583204.2 mRNA upstream 539494 63894665 ~ 63900193 (+) True LOC110504443
XR_005039920.1 mRNA upstream 550476 63888258 ~ 63889211 (+) True LOC118944562
XM_021597640.2 mRNA upstream 757445 63626178 ~ 63682242 (+) True gtf2f2b
XM_036974921.1 mRNA downstream 414854 64854740 ~ 64861974 (+) False zgc:152951
XM_036974919.1 mRNA downstream 414856 64854742 ~ 64861974 (+) False zgc:152951
XM_021597671.2 mRNA downstream 415013 64854899 ~ 64861974 (+) False zgc:152951
XM_036974920.1 mRNA downstream 415344 64855230 ~ 64861974 (+) False zgc:152951
XM_021597670.2 mRNA downstream 415972 64855858 ~ 64861974 (+) True zgc:152951
TU324010 other upstream 132327 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 355705 64071432 ~ 64083982 (+) True G285203
TU323188 other upstream 694194 63743006 ~ 63745493 (+) False G285001
TU323192 other upstream 694194 63743006 ~ 63745493 (+) True G285001
TU323169 other upstream 717623 63706568 ~ 63722064 (+) False G284986
TU325026 other downstream 669370 65109256 ~ 65109637 (+) True G286679
TU325057 other downstream 721505 65161391 ~ 65166580 (+) True LOC110520396
TU325080 other downstream 820559 65260445 ~ 65285556 (+) True zmym2
TU325972 other downstream 1594534 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 2109936 66549822 ~ 66550487 (+) True G288252

Expression Profile