RNA id: TU324631


Basic Information

Item Value
RNA id TU324631
length 228
lncRNA type intronic
GC content 0.36
exon number 1
gene id G286355
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64869147 ~ 64869374 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccatcagtcaggatgtggcacagaagataattgacagcatgccagggcggattgcagaggtcttgaaaaagaagggtcaacactgcatatattgactctttgcataaacttaatgtaattgtcaataacagcttatgaaatgcttgtaattatacttcagtattccatagtaacatctgacaaaaatatctaaagacactgaagcagcaaactttatggaaattaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324562 lncRNA upstream 99976 64768905 ~ 64769171 (+) True G286291
TU324555 lncRNA upstream 105296 64763618 ~ 64763851 (+) True G286284
TU324553 lncRNA upstream 105626 64762898 ~ 64763521 (+) True G286282
TU324511 lncRNA upstream 144815 64723619 ~ 64724332 (+) True G286240
TU324499 lncRNA upstream 156959 64711699 ~ 64712188 (+) True G286229
TU324632 lncRNA downstream 830 64870204 ~ 64870647 (+) True G286356
TU324633 lncRNA downstream 1335 64870709 ~ 64871001 (+) True G286357
TU324634 lncRNA downstream 1868 64871242 ~ 64871451 (+) True G286358
TU324644 lncRNA downstream 13776 64883150 ~ 64884207 (+) True G286367
TU324602 lncRNA downstream 42275 64911649 ~ 64914381 (+) True insig2
XM_036974921.1 mRNA upstream 7173 64854740 ~ 64861974 (+) False zgc:152951
XM_036974919.1 mRNA upstream 7173 64854742 ~ 64861974 (+) False zgc:152951
XM_021597671.2 mRNA upstream 7173 64854899 ~ 64861974 (+) False zgc:152951
XM_036974920.1 mRNA upstream 7173 64855230 ~ 64861974 (+) False zgc:152951
XM_021597670.2 mRNA upstream 7173 64855858 ~ 64861974 (+) True zgc:152951
XM_021597675.2 mRNA downstream 39272 64908646 ~ 64914396 (+) False insig2
XM_036974923.1 mRNA downstream 39272 64908646 ~ 64914396 (+) False insig2
XM_021597674.2 mRNA downstream 39273 64908647 ~ 64914396 (+) False insig2
XM_036974924.1 mRNA downstream 144917 65014291 ~ 65029795 (+) True marco
XM_021597682.2 mRNA downstream 263895 65133269 ~ 65146515 (+) False steap3
TU324010 other upstream 561787 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 785165 64071432 ~ 64083982 (+) True G285203
TU323188 other upstream 1123654 63743006 ~ 63745493 (+) False G285001
TU323192 other upstream 1123654 63743006 ~ 63745493 (+) True G285001
TU323169 other upstream 1147083 63706568 ~ 63722064 (+) False G284986
TU325026 other downstream 239882 65109256 ~ 65109637 (+) True G286679
TU325057 other downstream 292017 65161391 ~ 65166580 (+) True LOC110520396
TU325080 other downstream 391071 65260445 ~ 65285556 (+) True zmym2
TU325972 other downstream 1165046 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 1680448 66549822 ~ 66550487 (+) True G288252

Expression Profile