RNA id: TU324819


Basic Information

Item Value
RNA id TU324819
length 1207
RNA type TUCP
GC content 0.47
exon number 1
gene id G286522
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64969549 ~ 64970755 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcataaagtattcagaccctttgctatgagactcaaaattgagctcaggtgcatcctgtttccattgatcatccttctatttctacaacttggggtcaacctgtggtaaattcaattgattggacatgatctggaaaggcacacacctgtctatctaaggtcccaaagttgacagtgtatgtcagagcaaaaaccaagccattaggtcgaaggatttgtccgtagagctctgagacaggattgtgtcgaggcacagatctggggaagagtaacaacacatttctgcagcattgaaggtgccTAAGAACACAGTTGCCAAAATCATTCtaaaattgaagaagtttggaaccaccaaggctctttcATAGAGCTGGGCatcgggccaaactgagcaatcggggagatgggccttggtccgggaggtgaccaagaacccaatggacactctgacagagctccagagttcctctatggagatgggagaactttccagaaggacaaccatctctgcagcactcaatcaACCAGATCTTTATGCTAGAGtagtcagacggaagccacacctcagtaaaaaaggcacatgacagcccacttggagttcgccaaaagccacctaaaggactctcagactatgagaaacaagattctctggtctgatgaagccaagattgctctttggcctgaataccaagtgtcacgtctggaggaaacctggcaccatccctacggtgaagtatggtggtggcagcatcatgctgtggggatatttttcagctgcagggaatgggagactagtcaagattaagggaaagatgaacagagcaaagtacagagagatccttgatgaaaacctgctccagagtgctcaggacctcagactggggcaaaggttcaccttccaacaggacaaccacccAACCACACAACCagtacaacgcaggagtgactttgggacaagactctgaatgtccttgagcggctCAGCCAGAAAcaggacttgaaccagatcaaacatctttggagagaccggaaaatagctgtgtagggacgccatccaacctgacagagtttaagaggatctgcagagaagaaggggagatactccccaaatacaggtgtgccaagcttgtagcatcaaacccaagaagactcaaggatgttatcgctgcaaaaggtgcttcaacaaagtactcagtaaatggtctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324817 lncRNA downstream 90 64969235 ~ 64969459 (-) True G286520
TU324753 lncRNA downstream 41263 64891105 ~ 64928286 (-) True G286463
TU324710 lncRNA downstream 184698 64783433 ~ 64784851 (-) False G286426
TU324709 lncRNA downstream 184840 64784007 ~ 64784709 (-) True G286426
TU324708 lncRNA downstream 185740 64783433 ~ 64783809 (-) False G286426
TU324820 lncRNA upstream 503 64971258 ~ 64971597 (-) True G286523
TU324833 lncRNA upstream 7491 64978246 ~ 64978524 (-) True G286536
TU324889 lncRNA upstream 17028 64987783 ~ 64995840 (-) True en1a
TU324897 lncRNA upstream 26473 64997228 ~ 64997456 (-) True G286579
TU325034 lncRNA upstream 144493 65115248 ~ 65115510 (-) True G286687
XM_036965063.1 mRNA downstream 73566 64884338 ~ 64895983 (-) True LOC118944694
XM_021597666.2 mRNA downstream 78562 64862026 ~ 64890987 (-) False LOC110520386
XM_036974918.1 mRNA downstream 78562 64862534 ~ 64890987 (-) True LOC110520386
XM_021597667.2 mRNA downstream 86514 64862026 ~ 64883035 (-) False LOC110520386
XM_021597673.2 mRNA downstream 113698 64852503 ~ 64855851 (-) True LOC110520388
XM_021597678.2 mRNA upstream 16998 64987753 ~ 64992151 (-) False en1a
XM_021597676.2 mRNA upstream 16998 64987753 ~ 64992153 (-) False en1a
XM_021597681.2 mRNA upstream 135974 65106729 ~ 65108799 (-) True c1ql2
XM_021597684.2 mRNA upstream 175765 65146520 ~ 65150171 (-) True c3h2orf76
XM_036965070.1 mRNA upstream 203203 65173958 ~ 65182654 (-) False LOC110520397
TU322065 other downstream 2254372 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 7380366 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 7565974 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 7671787 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 9558062 55410143 ~ 55411487 (-) False G275250
TU324898 other upstream 43504 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 83945 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 83945 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 264425 65235180 ~ 65235908 (-) True G286953
TU325373 other upstream 327452 65298207 ~ 65300417 (-) True G286985

Expression Profile