RNA id: TU325084


Basic Information

Item Value
RNA id TU325084
length 738
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G286737
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65169865 ~ 65170602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTCGGACACCAAATGTACACGTCTCGTCTTTGACCCATAAACTCAGAAATCAAGAAGAATACTTTATCAATTTTCCAGGTTGTTTTTATCCACCTCGCACCATGTTCCGGGGCCAATGGTCACTGAGAAACAACACTTGGCATTTGTAGCTTATCGTTTCTTGCATAATGCATCTGGCAGTTTCACAAGATCATTATACTTTTTGTAGCAATGATTAGCTCATATTAGTTCAGGAGGCATGTTGAGCTTTGCACTGCTTTCTCACAGTTTGAGACAACATTTCTCAGTAGTGAAGAGTTGTTCATGCAATAATTGGGTGagcctacatgtatatattagtaATGGTGTGGGATTGGGAATCTCAACAATGGTTAGGCCTacatgtatatacactgctcaaaaaaataaagggaacacttaaacaacacaatgtaactcaatcaagtcaatcacacttctgtgaaatcaaactgtccacttaggaagcaacactgattgacaatacatttcacatgctgttgtgcaaatggaatatacaacaggtggaaattataggcaattagcaagacacccccaataaaggagtggttctgcaggtggtgaccacagaccacttctcagctcctatgcttcctggctgatgttttggtcacttttgaatgctggcggtgcattcactctagtggtagcatgagacggagtctacaacccacacaagtggctcaggtagtgcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325106 lncRNA upstream 16174 65153321 ~ 65153691 (+) True G286759
TU325104 lncRNA upstream 18849 65150713 ~ 65151016 (+) True G286757
TU325028 lncRNA upstream 59465 65110193 ~ 65110400 (+) True G286681
TU325027 lncRNA upstream 59884 65109781 ~ 65109981 (+) True G286680
TU325020 lncRNA upstream 61682 65106786 ~ 65108183 (+) True G286677
TU325068 lncRNA downstream 302 65170904 ~ 65176413 (+) True tmem37
TU325112 lncRNA downstream 11280 65181882 ~ 65182099 (+) True G286765
TU325116 lncRNA downstream 16378 65186980 ~ 65187254 (+) True G286769
TU325120 lncRNA downstream 44824 65215426 ~ 65215825 (+) True G286772
TU325081 lncRNA downstream 60868 65231470 ~ 65231851 (+) True G286734
XM_021597686.2 mRNA upstream 3285 65161342 ~ 65166580 (+) False LOC110520396
XM_021597682.2 mRNA upstream 23350 65133269 ~ 65146515 (+) False steap3
XM_021597683.2 mRNA upstream 23350 65133269 ~ 65146515 (+) True steap3
XM_036974924.1 mRNA upstream 140070 65014291 ~ 65029795 (+) True marco
XM_036974923.1 mRNA upstream 255469 64908646 ~ 64914396 (+) False insig2
XM_021597690.2 mRNA downstream 1027 65171629 ~ 65174336 (+) False tmem37
XM_036974926.1 mRNA downstream 21455 65192057 ~ 65208890 (+) False LOC110520399
XM_036974927.1 mRNA downstream 21464 65192066 ~ 65212814 (+) False LOC110520399
XM_021597692.2 mRNA downstream 28870 65199472 ~ 65208890 (+) True LOC110520399
XM_036974928.1 mRNA downstream 46455 65217057 ~ 65231345 (+) False LOC118964311
TU325057 other upstream 3285 65161391 ~ 65166580 (+) True LOC110520396
TU325026 other upstream 60228 65109256 ~ 65109637 (+) True G286679
TU324010 other upstream 862505 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 1085883 64071432 ~ 64083982 (+) True G285203
TU323188 other upstream 1424372 63743006 ~ 63745493 (+) False G285001
TU325080 other downstream 89843 65260445 ~ 65285556 (+) True zmym2
TU325972 other downstream 863818 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 1379220 66549822 ~ 66550487 (+) True G288252
TU326969 other downstream 1560684 66731286 ~ 66733797 (+) False G288430
TU327020 other downstream 1612771 66783373 ~ 66784786 (+) True LOC110505407

Expression Profile