RNA id: TU325305


Basic Information

Item Value
RNA id TU325305
length 538
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G286929
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65190969 ~ 65191506 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgcaggtatatctctctggtcacccccaaaaccaattctttctttggtcgcctctccttccagttctctgctgccaatgactggaacgaactacaaaaatctctaaaactggaaacacttatctccctcactagctttaagcaccaactgtcagagcagctcacggattactgcacctgtacatagcccacctataatttagctcaaacaactacctctttccctactgtatttatttgatttattttgctcctttgcaccccattatttttatttctactttgcacattcttccactgcaaatctaccattccagtgttttacttgctatattgtatttactttgccaccatggcctttttttgcctttacctcccttatctcacttaatttgctcacatcgtatatagacttgtttatactgtattattgactgtatgtttgttttactccatgtgtaactctgtgtcgttgtatgtgtcgaactgctttgctttatcttggccaggtcgaaattgtaaatgagaacttgttctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325301 lncRNA downstream 4453 65186271 ~ 65186516 (-) True G286925
TU325296 lncRNA downstream 16688 65174001 ~ 65174281 (-) True LOC110520397
TU325297 lncRNA downstream 17354 65173339 ~ 65173615 (-) True G286921
TU325291 lncRNA downstream 24403 65164639 ~ 65166566 (-) True G286918
TU325288 lncRNA downstream 35963 65154483 ~ 65155006 (-) True G286915
TU325332 lncRNA upstream 39928 65231434 ~ 65231863 (-) True G286951
TU325333 lncRNA upstream 40540 65232046 ~ 65232660 (-) True G286952
TU325303 lncRNA upstream 47562 65239068 ~ 65240985 (-) True G286927
TU325335 lncRNA upstream 53210 65244716 ~ 65244984 (-) True G286954
TU325340 lncRNA upstream 58725 65250231 ~ 65250498 (-) True G286959
XM_036965070.1 mRNA downstream 8315 65173958 ~ 65182654 (-) False LOC110520397
XM_021597684.2 mRNA downstream 40798 65146520 ~ 65150171 (-) True c3h2orf76
XM_021597681.2 mRNA downstream 82170 65106729 ~ 65108799 (-) True c1ql2
XM_021597676.2 mRNA downstream 198816 64987753 ~ 64992153 (-) False en1a
XM_021597678.2 mRNA downstream 198818 64987753 ~ 64992151 (-) False en1a
XM_021597696.2 mRNA upstream 129388 65320894 ~ 65326014 (-) True LOC110520402
XM_021597699.2 mRNA upstream 134656 65326162 ~ 65329900 (-) False gjb8
XM_021597700.2 mRNA upstream 134656 65326162 ~ 65330529 (-) True gjb8
XM_036974947.1 mRNA upstream 139326 65330832 ~ 65357384 (-) False cryl1
XM_021597697.2 mRNA upstream 139326 65330832 ~ 65362594 (-) False cryl1
TU324969 other downstream 114984 65054700 ~ 65075985 (-) True G286638
TU324968 other downstream 135758 65054700 ~ 65055211 (-) False G286638
TU324898 other downstream 161233 65014259 ~ 65029736 (-) True G286580
TU324819 other downstream 220214 64969549 ~ 64970755 (-) True G286522
TU322065 other downstream 2475792 62714575 ~ 62715177 (-) True G284018
TU325334 other upstream 43674 65235180 ~ 65235908 (-) True G286953
TU325373 other upstream 106701 65298207 ~ 65300417 (-) True G286985
TU325443 other upstream 255319 65446825 ~ 65447283 (-) True G287042
TU325523 other upstream 388285 65579791 ~ 65580495 (-) True G287112
TU327202 other upstream 1651165 66842671 ~ 66842881 (-) True G288578

Expression Profile