RNA id: TU325303


Basic Information

Item Value
RNA id TU325303
length 1462
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G286927
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65239068 ~ 65240985 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAACAACAGACCCTATACAAGTCAGCCTTAATGTTGAACTTAAACAGCTGTTGTGAAATCAATATGGTTAAGACAGTAGTGAATAAATATTAATATAAAATGTGTAAATGTTAATATTAGACAAGCAATAAAACAATTACGTGGAACGCTAGAGCCTTATGATCTACATATTTAGCAGGAAAGACAGGTACAATAGGAATAGGTTTTGTGTGATTATCTGAAACTAATTCCACACGTAGAACAAAGGAACCAATTCCAATTGGCAAAATCACATTTACAATAGCAACTTTTGGTCAAGGACGTGGATTGGAGAACCAAAAGCGTCCTGAAATTGTATGGGAAGTCAACCAACATTATAGTAAAAGTTACTATTGACCATAAATGATTGTGGGGCGATAGCCTCCACAATATAGTATGCATCGATTGAGGGTGTGTTCGTAATTtacgatttcagagcactctcccttgagtgtgccagagcgcacaATAACCCACGATTTTTTCATTGTTACAACTGTTGAATAACTGATGAACTTACGAACACGCAACACCCGTCGAATTTGACAGTTGTCAGTAAAGGTGGGCAAAAAACTGAATTAAATTGTTGCTAGCAACACAGTTACAGTCACTAACGCTCTAGATAactagctctgctagggtgagttaAATGGTCAGTGAGTTcgctcatttgtgtctggaagtagctagcaagctaaccaaCTTTAGCAAGCTAACCAACTGCCGTTGTGAGACAGCTCTCACGTGCTCATTTCTTTACAATAACTACCAGCAAACGATGTGCTACCGTTTTTGTAGCATCTGTACAAATTCTAACACCAGATCGGTTGTCATAAGAAATGTATGCAAACAAATCTAGGCTACTGtagatagatagctagctatatgttGGTATTCAAGCTGTTAATCAATAAATGCaaagtcacttgttaaatccacttcaaccagtgtagaggaaggggaggagaccagttaaaatgatttttaagcctggagacaattgGAGACATGGATtatgcatgtgtgccattcagagggtgaatgggcaagacaaaggatttgtgcctttgaacagagtatggtagtaggtgccaggcgcaccgttttaagtgtttcaagaactgcaaggctgtgtttgctattttgcaccccagtatctctacttgcacatcatcatctgcacatcaatcactccagtgttaatgctaaattgaaatgatttcgccactatggcctatttattgccttacctccctaattttactacatttgcacacactgtatatagtttttctattgtgttattgactgtacatttgtttatcccatgtgtaactctgttgttgtttttgtcgcactgcctcgctttatcttggccaggtcgcagttgtaaattagaaattgttctcaactggccttaaataaaggtgaaatatatcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325333 lncRNA downstream 6408 65232046 ~ 65232660 (-) True G286952
TU325332 lncRNA downstream 7205 65231434 ~ 65231863 (-) True G286951
TU325305 lncRNA downstream 47562 65190969 ~ 65191506 (-) True G286929
TU325301 lncRNA downstream 52552 65186271 ~ 65186516 (-) True G286925
TU325296 lncRNA downstream 64787 65174001 ~ 65174281 (-) True LOC110520397
TU325335 lncRNA upstream 3731 65244716 ~ 65244984 (-) True G286954
TU325340 lncRNA upstream 9246 65250231 ~ 65250498 (-) True G286959
TU325341 lncRNA upstream 10658 65251643 ~ 65251849 (-) True G286960
TU325342 lncRNA upstream 11004 65251989 ~ 65252788 (-) True G286961
TU325367 lncRNA upstream 49747 65290732 ~ 65304498 (-) True G286979
XM_036965070.1 mRNA downstream 56414 65173958 ~ 65182654 (-) False LOC110520397
XM_021597684.2 mRNA downstream 88897 65146520 ~ 65150171 (-) True c3h2orf76
XM_021597681.2 mRNA downstream 130269 65106729 ~ 65108799 (-) True c1ql2
XM_021597676.2 mRNA downstream 246915 64987753 ~ 64992153 (-) False en1a
XM_021597678.2 mRNA downstream 246917 64987753 ~ 64992151 (-) False en1a
XM_021597696.2 mRNA upstream 79909 65320894 ~ 65326014 (-) True LOC110520402
XM_021597699.2 mRNA upstream 85177 65326162 ~ 65329900 (-) False gjb8
XM_021597700.2 mRNA upstream 85177 65326162 ~ 65330529 (-) True gjb8
XM_036974947.1 mRNA upstream 89847 65330832 ~ 65357384 (-) False cryl1
XM_021597697.2 mRNA upstream 89847 65330832 ~ 65362594 (-) False cryl1
TU325334 other downstream 3160 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 163083 65054700 ~ 65075985 (-) True G286638
TU324968 other downstream 183857 65054700 ~ 65055211 (-) False G286638
TU324898 other downstream 209332 65014259 ~ 65029736 (-) True G286580
TU324819 other downstream 268313 64969549 ~ 64970755 (-) True G286522
TU325373 other upstream 57222 65298207 ~ 65300417 (-) True G286985
TU325443 other upstream 205840 65446825 ~ 65447283 (-) True G287042
TU325523 other upstream 338806 65579791 ~ 65580495 (-) True G287112
TU327202 other upstream 1601686 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 2385847 67626832 ~ 67633493 (-) True G289678

Expression Profile