RNA id: TU325443



Basic Information


Item Value
RNA id TU325443
length 459
RNA type TUCP
GC content 0.47
exon number 1
gene id G287042
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65446825 ~ 65447283 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGTAAGGCATGGGGgtgaaaacatcatgctttggggctgtttttctgcatagggaccaggacgactgatccgtgtaaagaaagaatgaatggggccatgtatcgcgagattttgagtgaaaacctccttccatcagcaagggcattgaagatgaaaagtggctgggtctttcagcatgacaatgattccaaacacaccgcccgggcaacgaaggagtggcttcgtaaaaagcatttcaaggtcctggagtggcctagccagtctccagatctcaaccccatagaaaatctttggagggagttgaaagtccgtgttgcacagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaacagtgagtgaaaaccttgtgaagacttacagaaaacatttgacctctgtcattgccaacaaagggtatat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU325442 lncRNA downstream 523 65446079 ~ 65446302 (-) True G287041
TU325401 lncRNA downstream 106930 65338173 ~ 65339895 (-) True G287005
TU325367 lncRNA downstream 142327 65290732 ~ 65304498 (-) True G286979
TU325375 lncRNA downstream 145901 65300694 ~ 65300924 (-) True G286986
TU325342 lncRNA downstream 194037 65251989 ~ 65252788 (-) True G286961
TU325444 lncRNA upstream 785 65448068 ~ 65448417 (-) True G287043
TU325474 lncRNA upstream 79665 65526948 ~ 65532451 (-) True G287067
TU325492 lncRNA upstream 107247 65554530 ~ 65554731 (-) True G287081
TU325494 lncRNA upstream 109144 65556427 ~ 65556658 (-) True G287083
TU325508 lncRNA upstream 120737 65568020 ~ 65568248 (-) True G287097
XM_036974949.1 mRNA downstream 14672 65392849 ~ 65432153 (-) False xpo4
XM_036974950.1 mRNA downstream 14680 65393502 ~ 65432145 (-) True xpo4
XM_021597703.2 mRNA downstream 56494 65387523 ~ 65390331 (-) False eef1akmt1
XM_036974948.1 mRNA downstream 56494 65387523 ~ 65390331 (-) True eef1akmt1
XM_021597701.2 mRNA downstream 56496 65387523 ~ 65390329 (-) False eef1akmt1
XR_005051354.1 mRNA upstream 10756 65458039 ~ 65458985 (-) True LOC110520406
XM_036974951.1 mRNA upstream 25002 65472285 ~ 65475542 (-) False ska3
XM_021597708.2 mRNA upstream 25002 65472285 ~ 65476510 (-) True ska3
XM_021597709.2 mRNA upstream 32857 65480140 ~ 65484785 (-) True hcn5
XR_005039939.1 mRNA upstream 38601 65485884 ~ 65486801 (-) True LOC118944602
TU325373 other downstream 146408 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 210917 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 370840 65054700 ~ 65075985 (-) True G286638
TU324968 other downstream 391614 65054700 ~ 65055211 (-) False G286638
TU324898 other downstream 417089 65014259 ~ 65029736 (-) True G286580
TU325523 other upstream 132508 65579791 ~ 65580495 (-) True G287112
TU327202 other upstream 1395388 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 2179549 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 2436469 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 2759307 68206590 ~ 68208395 (-) True si:ch211-214p13.7

Expression Profile