RNA id: TU325212



Basic Information


Item Value
RNA id TU325212
length 637
lncRNA type antisense_over
GC content 0.56
exon number 1
gene id G286849
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65453705 ~ 65454341 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACAGCCAGTATTGACCAGCTCCTGCAGCATCTGTCGGTTGACACCTCCAGCGGGGTGGGCAGAGCCAGAAGAGGGTCCAGTATTGTATTCAAACGGCCTGAGGGACTTGCGGATCTCCCTCAGAGCATTCTGGTAATTGTTGAACTTCTGAGGGGGCCGGTGCTGCTGCTGGCGACTGCCGGGGTCTTTGCTCTTGCTTTCGGCCCCGCGGCCCCCCTCGCCCCGGGAGCTGCCCCCGTGGAGGGCCTGGCTCATCAGCTTGGCCGGCTGCTTTAGCCCCTCCTTGATCTCCTGGAGGCGCTGGCGCGTGTTGCCCATGTACGGAGCAGCGGGGAACGTCTTGGGCCTCATGACACTCCCGTTTAAGTCTAAGGAACACACACTCAAATTCTAACCCaaaatctgacacacacacacacacacacacacactcctaagcGGTGCAAAAATATGTGAGATTGAgatttctctttctcgctctgtattactgtttttgtttgtctctgtgtggctGGCTCCTACTGATAGAAATCCCACTGGCGTGCCATGGTGTTTGTGTTTTAGGGGTCACACTCCTCCTTATTCCAAGTCTTGTGAGGGGTGACAAGGGTACCCTTGCCCCAAACCGTTCTGGCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU325206 lncRNA upstream 9151 65444312 ~ 65444554 (+) True G286843
TU325181 lncRNA upstream 42788 65407736 ~ 65410917 (+) True G286824
TU325073 lncRNA upstream 58920 65394376 ~ 65394785 (+) True G286726
TU325143 lncRNA upstream 119587 65291466 ~ 65334118 (+) True G286790
TU325219 lncRNA downstream 6655 65460996 ~ 65554174 (+) True G286855
TU325234 lncRNA downstream 26940 65481281 ~ 65482260 (+) True G286869
TU325201 lncRNA downstream 34816 65489157 ~ 65491063 (+) False LOC110520411
TU325199 lncRNA downstream 34928 65489269 ~ 65491432 (+) False LOC110520411
TU325200 lncRNA downstream 34928 65489269 ~ 65491063 (+) True LOC110520411
XM_036974945.1 mRNA upstream 66999 65362737 ~ 65386706 (+) False ift88
XM_021597716.2 mRNA downstream 34865 65489206 ~ 65491067 (+) False LOC110520411
XM_036974952.1 mRNA downstream 37618 65491959 ~ 65503791 (+) False popdc2
XM_021597715.2 mRNA downstream 37807 65492148 ~ 65503791 (+) True popdc2
XM_021597724.2 mRNA downstream 128694 65583035 ~ 65599863 (+) False wars2
XM_021597723.2 mRNA downstream 128729 65583070 ~ 65599863 (+) True wars2
TU325080 other upstream 168149 65260445 ~ 65285556 (+) True zmym2
TU325057 other upstream 287125 65161391 ~ 65166580 (+) True LOC110520396
TU325026 other upstream 344068 65109256 ~ 65109637 (+) True G286679
TU324010 other upstream 1146345 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 1369723 64071432 ~ 64083982 (+) True G285203
TU325972 other downstream 580079 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 1095481 66549822 ~ 66550487 (+) True G288252
TU326969 other downstream 1276945 66731286 ~ 66733797 (+) False G288430
TU327020 other downstream 1329032 66783373 ~ 66784786 (+) True LOC110505407
TU327305 other downstream 1538830 66993171 ~ 66994131 (+) True G288674

Expression Profile