RNA id: TU325474


Basic Information

Item Value
RNA id TU325474
length 3116
lncRNA type intronic
GC content 0.46
exon number 2
gene id G287067
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65526948 ~ 65532451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACCAAGCAAGTTTTCATAAATCATTGGGTACAGCGCAAGAAAAATGTCAGAGTAATCTGAAAGCAGCACAACAAGGCTCGACGAAGGAAAAGATGTAGGAGATGCAAGTGGTCAAAGAGGGGACCAGGAACACAGGCCGTGGACACGGAGCTACAGCAGGAATCAGTAATTAACCTCTCCAAAAAAGTCTGACGCGCAAATctcaagggccgcggcttttgtggcgcaaggggtaacgatgcttcgagggtggctgttgtcggtgtgtgcagagggtccctggtttgaaccCAGTCTTATCTAAGGGCCTCTCTTTTGTACCTGCATGTGCAGACAAACCATTTGATACGAAAGTAGATCTGTTTATGTTCTTTCGCAAGAAGTCAACTTAAGCACGTGTTTTCTCAAAACACTGTTTCGTGCCTAGAAACTCAACAAAGAACTGGTACCCATTTTAAGCCCAAAAGCAAATTATGGTCCTATGGTTAACAACTCCTCAATTAATACCTCCTCAATTATAGTCGAACAAGATGCCATGTCagtgtaacagtttagcttccgtccctctcctcgccccatacctgggctcgaaccagggaccctctgcacacaccgacaacagccaccctcgaagcatcgttacccattgcaCCACAAAAGcctcggcccttgcagagcaaggggaacaactatttcaaggtctcagagcgagtgacgtcaccgattgaaacgctattagtgtgcatcctgctaacaagctagccatttcacatcggttacactcaccccccttttgacctccctcttttccgcagcaaccagtgatccgggtcacggcaccaatgtaacagtttagcttccgtccctctcctcaccccgaACCAGTTACCCTCTGCACACaccgacaacagccacccttgaagtatcattacccatcgcgccacaaaagccaaggcccttgcagagcaaggggaacaactacttcaaggtctcagagcgagtgacatcaccgattgaaacgctattagcgagcaccccactaactagctagccatttcacatcggttacatcagTACATACGAGAAAAACAAACTACATTCAGAAGAACCTCACTAGAACAGAAGAACAGGCACTTAATGAACTAATGAAAGATTCATCTTTGGTTATTAAACCTGCAGACAAGGGGGGGTGCTGTTGTCGTTTTAGACTATGAAAAATACAAAGAAGAGATTCAGAGACAAATCAGCAATGAACGTTTCTATAGAAAACGGAGTGTTGATCCCACACAGGTGTTCCAAAGGGATATATGCTCTAATCTGGAGCCCTATTAAATAACCTTATCTCAAAACCTGAATATGAATATCCTTGCTGCAAATGTGCCATACGTCCATGCCTGTACATTTTGTCGAAATTACACAACCCTAAAACACAACAAGGCAATAATCCAGGCAAACCAGTGGTTGCAGGAATAGGCTCAATGCTAGAGCCATTGTCGAACTTCATAGACTCTTTTATTAAAATGAATGTGCAAGCATTGCCATCATATGTGAAAGACTGTAGACTTCATAAACAAGATTTCACTAATAACGGGTTTAACAGAAGACTGTATTTTGGTCACATTAGATGTCGAGAGTCTTACTATTTCAGGTCTGATGATGAACACTATCTCCAAACAAATGGAACATAGATGGACTCCACATTCGCTCCGAGCTATGCTAACCTTTATGTacccaggtaaagacagtttcaggttggatattcAACGGATATACGCGCTTTCAATCCTGAAtagctttcaaaccacttgagccacagactccaaatagtgtcatgatgttggaaaaattgcGCAGGTCTTATTTTCACTATTTGACCCTTAATTAGCTTTGAAAAGCTAATAAACGTGTGGAAATGTGAGCAGCATTTTGTATTCCTAGTTGAATTAGAGAATGTAAACAAAGTACAAACTTTTTTATatttgaatttcaatagctccttggtcatgtgacctactgacttcaaacaaggttcagaatgtccactgaccacccttctatattgcacacccttgagtttgtccattttcatctcacaagtTTTTACATTAATGTTTTTAATTttctaatttcaatagctccttggtcatgtgacctactgacttcaaacaagaTTCAGAATGTACCCCCCTTGGGCCTACACATTGCATACCCTTTtgttgtcaattttcatctcaCGCGATTTTACATTAATTTGCCTGCTCTGCCCCCATGAAGGACAGTGTCACTCACACACCTATTCACTTGGGACTTCTCCCTGGGGCCTTCCTGACCTCCAGCAGGCCCCCATTGACCTGGTGACCTCTGACTCCAGGCCTCTAGGCCCACACGCCTGCCTGCCCTCTCCTTGGGCCTGAGAGTGTATAGCTTTCTCCCAGGAACTACAGCCCTTCAGGCCTCCACACCTACTCTCCCTACCCGGTCAACACCCCTCTCCCTTAGCATATAGCTTACTCCCTGGAATTACTAAAACATCTATAGTCCTGCTGTCAGGAACCACGTGCACCTGGTAACCCGTAAGTCCCCACTCCAACATCCATGGCCATGGCCTGAGTGCAATCCTTATCCCGGAGTTACAGATCTTTTTTGCCAACTTCCCTTACCTACATTGTTGTAATATGCCAGAGGCTGTTccccttggagacctgctgcggatatgggtactgCCCTGCGTGAGATTTGCACCTTCTCCCTCAGATTTTCAAGGGCCAGGGAGAGCTGACCGGACGCCGCAGAAACCGCAaagctttccagggcttgggcccctctctcggggcgaacccattccagggcgccctgcccttcacaaagaaaagaaaactctccccggggctcccgccagcttctccgggatcggtcatGTTACCATACTGGATGCCTCGTGGCCCCCATCTCAACCAGTCCTTGGACATTCTGAAAGTAATTtgagATTACGCTGACGTTTTTCTTGCGCTGTACCCAATGATTTATGAAAACTTGCTTGGTAGGTCGATatcctcattgtggttttacagacgtgttttATGTTCACACTTTATTagaatatttatgaaatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325444 lncRNA downstream 78531 65448068 ~ 65448417 (-) True G287043
TU325442 lncRNA downstream 80646 65446079 ~ 65446302 (-) True G287041
TU325401 lncRNA downstream 187053 65338173 ~ 65339895 (-) True G287005
TU325367 lncRNA downstream 222450 65290732 ~ 65304498 (-) True G286979
TU325375 lncRNA downstream 226024 65300694 ~ 65300924 (-) True G286986
TU325492 lncRNA upstream 22079 65554530 ~ 65554731 (-) True G287081
TU325494 lncRNA upstream 23976 65556427 ~ 65556658 (-) True G287083
TU325508 lncRNA upstream 35569 65568020 ~ 65568248 (-) True G287097
TU325521 lncRNA upstream 46821 65579272 ~ 65579563 (-) True G287110
TU325631 lncRNA upstream 126202 65658653 ~ 65658911 (-) True G287206
XM_021597717.2 mRNA downstream 14603 65510598 ~ 65512345 (-) True hsd3b1
XR_002472975.2 mRNA downstream 18564 65503985 ~ 65508384 (-) False pla1a
XM_021597713.2 mRNA downstream 18564 65503988 ~ 65508384 (-) True pla1a
XR_005039939.1 mRNA downstream 40147 65485884 ~ 65486801 (-) True LOC118944602
XM_021597709.2 mRNA downstream 42163 65480140 ~ 65484785 (-) True hcn5
XM_036974955.1 mRNA upstream 3363 65535814 ~ 65548205 (-) False LOC110520413
XM_036974956.1 mRNA upstream 3363 65535814 ~ 65549337 (-) False LOC110520413
XM_021597720.2 mRNA upstream 3363 65535814 ~ 65549415 (-) False LOC110520413
XM_021597721.2 mRNA upstream 3363 65535814 ~ 65549415 (-) False LOC110520413
XM_021597722.2 mRNA upstream 3363 65535814 ~ 65549415 (-) True LOC110520413
TU325443 other downstream 79665 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 226531 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 291040 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 450963 65054700 ~ 65075985 (-) True G286638
TU324968 other downstream 471737 65054700 ~ 65055211 (-) False G286638
TU325523 other upstream 47340 65579791 ~ 65580495 (-) True G287112
TU327202 other upstream 1310220 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 2094381 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 2351301 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 2674139 68206590 ~ 68208395 (-) True si:ch211-214p13.7

Expression Profile