RNA id: TCONS_00029477


Basic Information

Item Value
RNA id TCONS_00029477
length 476
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_014943
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 35433155 ~ 35450857 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGAGTAACCTCCAAACACCTGTGATGGCCAGCCCTGGTGGTCCAAATGCAGTGCGCACCAGTAGCTTTGTACTTGTTGGATCACACAAGTTAACTCTGGCTTCTATTGGGAAAAACAAGTTCCCTTTGGAGAAGATCAAATATGAAAGGAGTGAAAGAGAGCTGCTCAGTGACATGTTTCACAATAAGgTGCCTTTTCTTTGTCCTTTGGAGGGGCATGTATATCTAAAAATGCAGTGTGAGGTTGGCTCACGGATAGAGGAAAAAGGCTTCCTGACTATGTTTGAAGATGTCAGTGGTTTTGGGGCCTGGCACAGGAGGTGGTGCGTCCTTTCAGGATACTGCATCTCCTATTGGACCTACCCTGATGATGAAAAACGGAAGAATCCAATGGGCCGCATTAACCTTGCCAACTGTACCAGTCGTAAAGTGGAGCCGGCAAACCGAGAGTTCTGTGCTCGACCCAATACATTTGA

Function

GO:

id name namespace
GO:0032836 glomerular basement membrane development biological_process
GO:0003094 glomerular filtration biological_process
GO:0000915 actomyosin contractile ring assembly biological_process
GO:0031106 septin ring organization biological_process
GO:0072015 glomerular visceral epithelial cell development biological_process
GO:0008356 asymmetric cell division biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0005826 actomyosin contractile ring cellular_component

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-030131-4486 Acts upstream of or within asymmetric cell division; glomerular filtration; and glomerulus development. Predicted to be active in actomyosin contractile ring. Is expressed in brain; optic cup; optic tectum; and retina. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis 8. Orthologous to human ANLN (anillin actin binding protein).

Ensembl:

ensembl_id ENSDART00000145883

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029458 lncRNA downstream 455191 34966757 ~ 34979824 (-) True XLOC_014933
TCONS_00030301 lncRNA downstream 747463 34660712 ~ 34687552 (-) False XLOC_014929
TCONS_00030302 lncRNA downstream 747463 34677004 ~ 34687552 (-) True XLOC_014929
TCONS_00030300 lncRNA downstream 747485 34660712 ~ 34687530 (-) False XLOC_014929
TCONS_00030299 lncRNA downstream 760139 34660712 ~ 34674876 (-) False XLOC_014929
TCONS_00029487 lncRNA upstream 969757 36408994 ~ 36416038 (-) False XLOC_014947
TCONS_00030303 lncRNA upstream 1271261 36710498 ~ 36731093 (-) False XLOC_014948
TCONS_00030304 lncRNA upstream 1276909 36716146 ~ 36731093 (-) True XLOC_014948
TCONS_00030305 lncRNA upstream 1389714 36828951 ~ 36862051 (-) False XLOC_014949
TCONS_00030306 lncRNA upstream 1422339 36861576 ~ 36938485 (-) False XLOC_014949
TCONS_00029470 mRNA downstream 6101 35418683 ~ 35428914 (-) False XLOC_014941
TCONS_00029471 mRNA downstream 6200 35418732 ~ 35428815 (-) False XLOC_014941
TCONS_00029469 mRNA downstream 34196 35379899 ~ 35400819 (-) True XLOC_014940
TCONS_00029468 mRNA downstream 73459 35357196 ~ 35361556 (-) True XLOC_014939
TCONS_00029466 mRNA downstream 205679 35041245 ~ 35229336 (-) False XLOC_014938
TCONS_00029478 mRNA upstream 15935 35455172 ~ 35492784 (-) False XLOC_014944
TCONS_00029479 mRNA upstream 19585 35458822 ~ 35492736 (-) False XLOC_014944
TCONS_00029480 mRNA upstream 20665 35459902 ~ 35492693 (-) False XLOC_014944
TCONS_00029482 mRNA upstream 57045 35496282 ~ 35596207 (-) True XLOC_014945
TCONS_00029483 mRNA upstream 283665 35722902 ~ 35733401 (-) True XLOC_014946
TCONS_00029473 other downstream 6121 35421677 ~ 35428894 (-) True XLOC_014941
TCONS_00029472 other downstream 14064 35420835 ~ 35420951 (-) True XLOC_014942
TCONS_00029451 other downstream 1339338 34092572 ~ 34095677 (-) True XLOC_014926
TCONS_00029449 other downstream 1345710 34080946 ~ 34089305 (-) True XLOC_014925
TCONS_00029446 other downstream 1457021 33977878 ~ 33977994 (-) True XLOC_014924
TCONS_00029481 other upstream 23145 35462382 ~ 35465580 (-) True XLOC_014944
TCONS_00029490 other upstream 1788673 37227910 ~ 37228025 (-) True XLOC_014951
TCONS_00029492 other upstream 2198137 37637374 ~ 37637493 (-) True XLOC_014956
TCONS_00029493 other upstream 2589261 38028498 ~ 38028618 (-) True XLOC_014957
TCONS_00029494 other upstream 2622763 38062000 ~ 38062124 (-) True XLOC_014958

Expression Profile

//