RNA id: TU325640


Basic Information

Item Value
RNA id TU325640
length 268
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G287215
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65676108 ~ 65676375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaaataagcatcaaccagtgggtcttgtgacgggtatacagagatgaccagtttacagaggagtatagagtgcagtgatgtgtcctatgagGAGCATTAGTGGCAAATCTGTTGGCTGAACGGTAAAGAACATATAGCATGGGTCTGACATGGGTTCTGTGAGAATATCATGAGTTGGTCTTGTGCTGGCTTATCCTTCTTACAGAGGAAGCACAGTAGCCATGTCAGGATATTTTCCCTCTCCAGGCTGATTGACAGGTGTCCAAC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325570 lncRNA upstream 39114 65635380 ~ 65636994 (+) True LOC110520416
TU325545 lncRNA upstream 64803 65611018 ~ 65611305 (+) True G287133
TU325506 lncRNA upstream 108333 65567475 ~ 65567775 (+) True G287095
TU325504 lncRNA upstream 111208 65564669 ~ 65564900 (+) True G287093
TU325496 lncRNA upstream 117816 65558078 ~ 65558292 (+) True G287085
TU325708 lncRNA downstream 49522 65725897 ~ 65726577 (+) True G287281
TU325724 lncRNA downstream 62351 65738726 ~ 65738959 (+) True G287295
TU325726 lncRNA downstream 63404 65739779 ~ 65740008 (+) True G287297
TU325729 lncRNA downstream 68647 65745022 ~ 65745346 (+) True G287300
TU325738 lncRNA downstream 79962 65756337 ~ 65756537 (+) True G287309
XM_036974958.1 mRNA upstream 39022 65614185 ~ 65637086 (+) False LOC110520416
XM_036974959.1 mRNA upstream 39022 65614185 ~ 65637086 (+) False LOC110520416
XM_036974960.1 mRNA upstream 39022 65614185 ~ 65637086 (+) False LOC110520416
XM_036974961.1 mRNA upstream 39022 65614185 ~ 65637086 (+) False LOC110520416
XR_005051355.1 mRNA upstream 39022 65614185 ~ 65637086 (+) False LOC110520416
XM_021597727.2 mRNA downstream 100821 65777196 ~ 65813495 (+) True LOC110520417
XM_036974967.1 mRNA downstream 351258 66027633 ~ 66036299 (+) False LOC118964312
XM_036974968.1 mRNA downstream 351258 66027633 ~ 66036299 (+) False LOC118964312
XM_036974969.1 mRNA downstream 351258 66027633 ~ 66036299 (+) False LOC118964312
XM_036974971.1 mRNA downstream 351258 66027633 ~ 66036299 (+) False LOC118964312
TU325080 other upstream 390552 65260445 ~ 65285556 (+) True zmym2
TU325057 other upstream 509528 65161391 ~ 65166580 (+) True LOC110520396
TU325026 other upstream 566471 65109256 ~ 65109637 (+) True G286679
TU324010 other upstream 1368748 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 1592126 64071432 ~ 64083982 (+) True G285203
TU325972 other downstream 358045 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 873447 66549822 ~ 66550487 (+) True G288252
TU326969 other downstream 1054911 66731286 ~ 66733797 (+) False G288430
TU327020 other downstream 1106998 66783373 ~ 66784786 (+) True LOC110505407
TU327305 other downstream 1316796 66993171 ~ 66994131 (+) True G288674

Expression Profile