RNA id: TU325726


Basic Information

Item Value
RNA id TU325726
length 230
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G287297
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65739779 ~ 65740008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCAGCCCCTACTGGATTGGCTGTTGATACCTAACCTGCTTGCTAGCTTGCCAGCACCGACATGAGGGCGAAGCTAGCGTGGCTATCCATATAGTGGATTACTGCTTTAAGTCTGAGTACCAGCTACTGAGAAATGCGCATCATAAGAAAGGTGTGTGTAAGAAAGGCGTACATTTCCTAAGTCTGAATCAGCCCCTATGTGAGGACTCCCTCAACCATGTCACTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325724 lncRNA upstream 820 65738726 ~ 65738959 (+) True G287295
TU325708 lncRNA upstream 13202 65725897 ~ 65726577 (+) True G287281
TU325640 lncRNA upstream 63404 65676108 ~ 65676375 (+) True G287215
TU325570 lncRNA upstream 102785 65635380 ~ 65636994 (+) True LOC110520416
TU325545 lncRNA upstream 128474 65611018 ~ 65611305 (+) True G287133
TU325729 lncRNA downstream 5014 65745022 ~ 65745346 (+) True G287300
TU325738 lncRNA downstream 16329 65756337 ~ 65756537 (+) True G287309
TU325763 lncRNA downstream 29184 65769192 ~ 65769561 (+) True G287334
TU325771 lncRNA downstream 70562 65810570 ~ 65812016 (+) True G287342
TU325813 lncRNA downstream 120517 65860525 ~ 65861536 (+) True G287383
XM_036974958.1 mRNA upstream 102693 65614185 ~ 65637086 (+) False LOC110520416
XM_021597727.2 mRNA downstream 37188 65777196 ~ 65813495 (+) True LOC110520417
XM_036974967.1 mRNA downstream 287625 66027633 ~ 66036299 (+) False LOC118964312
XM_036974968.1 mRNA downstream 287625 66027633 ~ 66036299 (+) False LOC118964312
XM_036974969.1 mRNA downstream 287625 66027633 ~ 66036299 (+) False LOC118964312
XM_036974971.1 mRNA downstream 287625 66027633 ~ 66036299 (+) False LOC118964312
TU325080 other upstream 454223 65260445 ~ 65285556 (+) True zmym2
TU325057 other upstream 573199 65161391 ~ 65166580 (+) True LOC110520396
TU325026 other upstream 630142 65109256 ~ 65109637 (+) True G286679
TU324010 other upstream 1432419 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 1655797 64071432 ~ 64083982 (+) True G285203
TU325972 other downstream 294412 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 809814 66549822 ~ 66550487 (+) True G288252
TU326969 other downstream 991278 66731286 ~ 66733797 (+) False G288430
TU327020 other downstream 1043365 66783373 ~ 66784786 (+) True LOC110505407
TU327305 other downstream 1253163 66993171 ~ 66994131 (+) True G288674

Expression Profile