RNA id: TU325729


Basic Information

Item Value
RNA id TU325729
length 325
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G287300
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65745022 ~ 65745346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctatttctctcttgcttcttcctcattttggaagaaattaatttgttcaaaactgttcaactattgtctttctctctctttgaatcaactactcaccacattttatgcactgtagtgctagctagctgtagcttatgctttcagtactagatttgttctctgatcctttgattgggtggacagcatgtcagttcatgctacaagagttctgataggttggaggatgtcctccggaagttttcataattactgtgtaagtctatggaagggggtgagaaccatgagcctcctaggttttgtattgaagtcaatgcacccagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325726 lncRNA upstream 5014 65739779 ~ 65740008 (+) True G287297
TU325724 lncRNA upstream 6063 65738726 ~ 65738959 (+) True G287295
TU325708 lncRNA upstream 18445 65725897 ~ 65726577 (+) True G287281
TU325640 lncRNA upstream 68647 65676108 ~ 65676375 (+) True G287215
TU325570 lncRNA upstream 108028 65635380 ~ 65636994 (+) True LOC110520416
TU325738 lncRNA downstream 10991 65756337 ~ 65756537 (+) True G287309
TU325763 lncRNA downstream 23846 65769192 ~ 65769561 (+) True G287334
TU325771 lncRNA downstream 65224 65810570 ~ 65812016 (+) True G287342
TU325813 lncRNA downstream 115179 65860525 ~ 65861536 (+) True G287383
TU325913 lncRNA downstream 213840 65959186 ~ 66022656 (+) True G287470
XM_036974958.1 mRNA upstream 107936 65614185 ~ 65637086 (+) False LOC110520416
XM_021597727.2 mRNA downstream 31850 65777196 ~ 65813495 (+) True LOC110520417
XM_036974967.1 mRNA downstream 282287 66027633 ~ 66036299 (+) False LOC118964312
XM_036974968.1 mRNA downstream 282287 66027633 ~ 66036299 (+) False LOC118964312
XM_036974969.1 mRNA downstream 282287 66027633 ~ 66036299 (+) False LOC118964312
XM_036974971.1 mRNA downstream 282287 66027633 ~ 66036299 (+) False LOC118964312
TU325080 other upstream 459466 65260445 ~ 65285556 (+) True zmym2
TU325057 other upstream 578442 65161391 ~ 65166580 (+) True LOC110520396
TU325026 other upstream 635385 65109256 ~ 65109637 (+) True G286679
TU324010 other upstream 1437662 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 1661040 64071432 ~ 64083982 (+) True G285203
TU325972 other downstream 289074 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 804476 66549822 ~ 66550487 (+) True G288252
TU326969 other downstream 985940 66731286 ~ 66733797 (+) False G288430
TU327020 other downstream 1038027 66783373 ~ 66784786 (+) True LOC110505407
TU327305 other downstream 1247825 66993171 ~ 66994131 (+) True G288674

Expression Profile