RNA id: TCONS_00029478


Basic Information

Item Value
RNA id TCONS_00029478
length 5641
RNA type mRNA
GC content 0.38
exon number 7
gene id XLOC_014944
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 35455172 ~ 35492784 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCAACAGGCTCTTGCGCAAATGTGACGCAGTCGGCGCTTGACTCCTCCCCTTCAGATCATCTCAATTCAGATTTCGCTGTGAGGGCGACAAATACGACTTCACCCTGAAAGCGGTTACGGCTCTACGTGCACTTTCTCCGGGATTGCCAAGGGATTTCAATGGTTGGCCCGTTCTTTTGTTTCCGTGTTGATTCGGATCACACATATATGGCGTTTGTGACCGTCTGCAGAGAGTTCTGCCAGGCTCAGCACCTCACCTTTGCGGACAAGTGAATCGATAGCTGCCCGTGGGACTACGCCACCCAGAAGCCTCCCTGACAGCCAGCACACTGGGCCCGTCTGTCTCTTCTATACCCTTTTGGGATCCCGTGTAGTCCTCGAGCATCCCTGTCTCATTCCTTCCTACAGATTTTTCTCCctgtagccaatcagaaactctTCTCCTGAATGGGaCGTCTTGCCAACATGAACCGCCCTGCCGCTGTTGAGATTTCCTATGACTGCATGAGATTCCTCATCACACACAACCCCACCAACTCCACTCTCAACAAGTTTACTGAGGAGCTGAAGAAGTTTGAGGTGAACACACTGGTCAGAGTATGTGAAGCCACCTATGACACGGCACTAGTGCAGAAGGAGGGCATCCAAGTCTTTGACTGGCCCTTTGATGATGGAGCTTCGCCCCCCACTCGGATTGTAGACGATTGGTTAAACCTGCTGAAGACTAAGTTCCGAGAGGAGCCAGGATGCTGCATTGCCGTTCACTGTGTTGCAGGGTTGGGCCGAGCACCTGTGCTGGTGGCTTTAGCCTTACTCGAGTGTGGAATGAAGTATGAAGAAGCAGTGATGTACATACGACAGAAGCGACGTGGAGCCTTCAACGCCAAACAGCTCATGTACCTTGAAAAATACCGACCCAAGATGCGTCTGAGGTTCAAGGAGGCCAACGGTCACAACTGCTGTATCCAGTAGTGCGTCATTCTGTCAGTCATACAAAACAGCAGTGGGATGTTCAACCAGGGTATATAGGGGAGCAAAAGCTGTGGGTTGTAATTGTGGTGATTAATATCAAACGAATCATGGCTAATCGATCACAGAATAATGAAGCTGATCTATGGATTCACCAGCAGTATCAAAGAGAAGGGTCAAAGCACACAGACGAGCCCACAAACCTGGTCGCTTAACCAGTGTTACCAGTCACGGGCTAGAATATACTAACGTTCCCCTGATTTCCCAAATTTCCAATCATGGGACGACTTTATTTCGGGTTATTTCAGAATGAGTACTTTGAATCGTGATCAAAAGATTTACAATTGTTAAATGCTGTCATTTGTTGATTTATTACTGCTTTTTTTATTCTGAAGACATTGTTGGGCATGTTTTcttttatcgtttttttttttattattattattatttcaacaaaCAATAGCCAATTTTGTTACATAAACAAACTATAAAGTAGACATACGATATTTTTGCACAATACAACATTTTTGAGAAGTTCCCCTTTGATGCAGCaatcactttttttaatttagggtTAGCCTGGGTTTGAAATATGCCAGCTGTATTTATTCACTATAATTAGCGCGTCTTGTCAGGAGTTCGGGTGGGGTTCGTTCTTTTCTTTCGTGGAGCCATGTATTTTTCAGTCCTTTTCTTAATCTCTGGGGAGTGCAATATTCAGTCCAGATTAGAAAAGCCTTCACCCTTAGGACCGTCCTACATCCAGATTCAAACACAGGAGGATTCTCGGCTTGTCTTCTTCGGTACTCGCTTTCAATTGCTGCTCTTTGCTGGCTGGTCAGTAAGAAGCTTTTATCTGTTGAGCCCACAGACACACTGAAGGAAGTAAGAAGCAGGAAAACCGGCCAGCGctggctttatttttattttaatccacCTTTTCTTTATCATCATTGTGCCCATTTTGAAAGCATCCCCACTTCATCTTGGTTTTAagacaaataaatgaattgaaattgATCCATTGTGTGTTCCTTCCTGTAATGTGTAAGCTATTTAGAGTTCTCGGTGGATGAGTCATTATGGGATGACTGATTTTACGGCCACCTTCGAGATAACATCTCAAATTACAGAGGGAGATTCTGTGAGAAGTCATTTGAGAAAATAGCTCCTGCGACAGAAAAGGAAATCAATCTATCAGAAAATGAAAATTGAACATGGGACAAAAAGATGGATCTGTCCAGGGACTTTGGAacttttaatgaccacagtgggTCAGTCGGTTTGAAAGTTAGCgcttactgacagtatagtgtccctttcttttttactggggcgttaggactcacacagaccacaggttgagcgccctctgctAGCCTTACTAACTTCTAGTTTTCCTATGtggcctcccatccaggtacagGCGAGGCTCAGCCCTGCATCATAATATCAAGTAGTTTCTTAAATATCAACTAGTTTAATTAGTAAAAAAGTtctatttattaaatgaaaagaaTTGGCAATGATCCATtaattcgttttccttcagctttctCCCTTCtcaggtgtcaccacagtggaataaactgccagcttatccagcacatgttttatgcagctgatggccttccagctgcaaacaagtactgggaaacacccatacactcacattcacaaacatacactactggCAGTTTGGCCTATTCAGTTTACCtagagtgcatgtctttggactatgggggaaactggaggaaacgCACAAAtgtacatggggagaacatgctaactccatacagaaatgccaactgactcagctggggctTAAACTAGTGACCTGACCTttatgctgtgaggtgacagtataactgctgagccactgtgctgccctattacaaacattttttatttttatattaattttactgTTGCTGTATGGAGTAATGAAAAAACTAATTGTATGCTCAATAATACCCGATTTTAATGAGATATTTTACTTCGCTAATATTTCTTTGATGTATACATTTTCTTATAGGAGTAAAGAAATAACAATGTATTATAACTAAACATTTTACCAAACTGACAATACGAATGGTTTGTAagtctgttatttaaaaaaaaaaatttcagtgaaaaaaaaaaaaacgagaaaagaaaacttgtaattttaactttgtaatttaatttagttattatattaattacaaattatgAAATACTTCACAGtatcaggcccatagccagcttGGTGTAAGagattttttgcagttattctcataattttctattaaattatgtGGTTTGAATACTGCATTTGTGACATTTTTAAAGCACaaatttttgctggattagcatgtcggatggtgatcataaccacactttttgaagcaacaaaaatatttcctacatttttgtcaaaggGCTTACTATTCTAccacaaagtgtttatttacaaatgtgcattacaACTGTTATTAcagtttatgtaatgtaatgacaTAAGACTTTTGAAGGGCACGTATAATGAATATCAacatttgtaagctgtttggacagatctgtgtgaaggtattgtgtccacagtcatattggagtgacagAAACTCAAGACAGCAAAATAGGCAGATTCTagaggctataataaatgatctgattagtattttgagctgaaacttcacagacacattctggagacaccaaaggcttatcttacatcttgtaaaaggagtaatataggtgccctttaaatgacaaattttaaataaagaaacatggaaaaaaatcctcgttttaaaaatacaaattattattatccatcatttataaaaaaaactattaggaatctgtttaaaacttattttaaatgaaaaacagtaATACAGGCAAATAACAACCTGACCAGCTCTTTTCCTCAGTCaattggtcttaaagccttttatttgttattttcacaatttattaagccatactgtccaaaatgggacaaatgagctcatatagcagccaaattctggactttgttagtaagggttttttttttacagggacAAATTTAACCAATGAGCAAGATAGGCAACCTCTAAGGGCCCCATGCAGGAAATCTGAGTGCTCCCaaataaatacttattatttattatatacttaATTATACATAACATCATTTTCCATCATATTTTGTGTGATGtgtcaaaaaaattaaaagtttaatgtTTATAAAGGTATCCCCACTCTCAATCATAAAGAAATCCAGCAGTCAAattaagatttagttttaaaaaaacgaaatattttatttatactttttagtttttaattaatgaatttaagaaaacaaatcattcaaAAAGTTTTACAAGATGTTTTACATCTTGTTATTTTCCATTAAGACAAATTGTAGAAAAGAAGTGATTTGAGTGATATTAgagaaaaaacagcaaaataaatcaatacaaaaataaattaaagtagaaAAGGTGTATTTTAGAACTTTTGGGCCTTATGGCTGGAATAACTTGGGACCCCAAATCACTAACTCCGTCCCTGGGTTTACCGGGTAGCGACAGTGACAGATGGCTGGTTAGAAAGTATTTACAGCCATTGGTAGGCATTGTAAAATGGCAGTTACAGAGAACGATCAAGAAGATTACGGTTTTCCTGTGTTCATTTAAAGGCATCATGACTCACTTGCATCCACGAGGCTTTCTTTTCCTCTGTCCAGAAAGGTCCTGACCGGTCAATGACTCATGTACAGCTCATCTGATGTGGCGTTTCTATCAGCAGGAGTGGAAGTGCAGATGACGAAACTCGTGAAATATTTAATTCAGTCACATGATGGAAATCCACAGGAAGTTGGGAAATGACCCATTTATTTCCATCTCTGCACCTGCTGGCATAATCCACGGGAGTCTGAAACATGAAGAGTCGGATGTATGACACAATGTTATCGTTTCATTAGGTTGACTCATAATAATGCATAATCTAATTAGATTTGAAACTGTTGACTTGTAGTAAAGAAGATTTTCCAGATTGTACAAGACTGCTCTTTGTTTGTTGGCAGTGCCATCTGCTGGATAGTCGTCTCCCTGAAGGATTTTGAATTGTAGGATTTTCGAGTAACactggttctcaaagtgggggtcgcgggacaatttGGGGGGTCAtttggtaatttaataaaaaaacaaacagaattatcttattttatccataacctacaaaagatagaataaaaatattcatctttatttccataGCACTTTcaatttagattgtgtcaaagcagcttaacatagaaggtctagtaaattgaaactgtgtcagtccagtttccagagttgaagttcagttcagtttagttaagtgtggtttaatattcactgcagAAAGTATTTACTAgttagattaaaaaaacaacaacaacatgtacataaaaagccatcagcctttcaattatttttttcttttggattgCGACTCCTGGTATGTTTACATTAAGGCAAGGcatgtttatttctgtagcacatttcatacacagtggcaattgaAAGTTCTTTACATAAACGCCAATAAAAGacacaagtataaataaaatagaaacaaataatataaaaacagatgaaaacggTTTAAAGACAGTTTTACCATATTTCAAAACACCAGGTTTATCATAT

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-111 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within dephosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including fin; gut; head; myotome; and neuromast. Orthologous to human PTP4A2 (protein tyrosine phosphatase 4A2).

Ensembl:

ensembl_id ENSDART00000177052

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029458 lncRNA downstream 475348 34966757 ~ 34979824 (-) True XLOC_014933
TCONS_00030301 lncRNA downstream 767620 34660712 ~ 34687552 (-) False XLOC_014929
TCONS_00030302 lncRNA downstream 767620 34677004 ~ 34687552 (-) True XLOC_014929
TCONS_00030300 lncRNA downstream 767642 34660712 ~ 34687530 (-) False XLOC_014929
TCONS_00030299 lncRNA downstream 780296 34660712 ~ 34674876 (-) False XLOC_014929
TCONS_00029487 lncRNA upstream 916210 36408994 ~ 36416038 (-) False XLOC_014947
TCONS_00030303 lncRNA upstream 1217714 36710498 ~ 36731093 (-) False XLOC_014948
TCONS_00030304 lncRNA upstream 1223362 36716146 ~ 36731093 (-) True XLOC_014948
TCONS_00030305 lncRNA upstream 1336167 36828951 ~ 36862051 (-) False XLOC_014949
TCONS_00030306 lncRNA upstream 1368792 36861576 ~ 36938485 (-) False XLOC_014949
TCONS_00029476 mRNA downstream 4315 35434735 ~ 35450857 (-) False XLOC_014943
TCONS_00029475 mRNA downstream 4510 35433197 ~ 35450662 (-) False XLOC_014943
TCONS_00029474 mRNA downstream 4511 35433155 ~ 35450661 (-) False XLOC_014943
TCONS_00029477 mRNA downstream 15935 35435015 ~ 35439237 (-) True XLOC_014943
TCONS_00029470 mRNA downstream 26258 35418683 ~ 35428914 (-) False XLOC_014941
TCONS_00029482 mRNA upstream 3498 35496282 ~ 35596207 (-) True XLOC_014945
TCONS_00029483 mRNA upstream 230118 35722902 ~ 35733401 (-) True XLOC_014946
TCONS_00029484 mRNA upstream 622062 36114846 ~ 36675023 (-) False XLOC_014947
TCONS_00029485 mRNA upstream 724354 36217138 ~ 36234185 (-) False XLOC_014947
TCONS_00029486 mRNA upstream 885518 36378302 ~ 36401282 (-) False XLOC_014947
TCONS_00029473 other downstream 26278 35421677 ~ 35428894 (-) True XLOC_014941
TCONS_00029472 other downstream 34221 35420835 ~ 35420951 (-) True XLOC_014942
TCONS_00029451 other downstream 1359495 34092572 ~ 34095677 (-) True XLOC_014926
TCONS_00029449 other downstream 1365867 34080946 ~ 34089305 (-) True XLOC_014925
TCONS_00029446 other downstream 1477178 33977878 ~ 33977994 (-) True XLOC_014924
TCONS_00029490 other upstream 1735126 37227910 ~ 37228025 (-) True XLOC_014951
TCONS_00029492 other upstream 2144590 37637374 ~ 37637493 (-) True XLOC_014956
TCONS_00029493 other upstream 2535714 38028498 ~ 38028618 (-) True XLOC_014957
TCONS_00029494 other upstream 2569216 38062000 ~ 38062124 (-) True XLOC_014958
TCONS_00029496 other upstream 2971343 38464127 ~ 38464249 (-) True XLOC_014961

Expression Profile

//