RNA id: TU325913


Basic Information

Item Value
RNA id TU325913
length 2509
lncRNA type read_through
GC content 0.46
exon number 2
gene id G287470
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65959186 ~ 66022656 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGATTAGTTTGCAACATAACTTCTGAGTGCACCACCAAAGTGACGGTGCATGCCATGGACATgtcccagttgctttgaatgttcaaaatcatagtgtaagaacTCTTAAAGCCTCAATAGGATGATCAAACGTTTTAAAACAAATCCTTTATGTCTAGCTACAGCAGTCAACTAGTTAGGTAGCCATTTAGCATTCCAGCACATTCACTCATCTttttgtaaacaattaacaagcttcaaatcaaactttatttgccacatgcgccaaatacatgTGCAgaggttacagtgaaatgcttacttacaagcccttaactattattgaactgcactgttgattacaaaggtaatgtgtacatgtaggtaggggtgaagtgactatgcatagataataaacagcgagtagcagcagtgaaaAAAACAATGGGTGACAATGTAAATAATCCAGTGGCCATtggttaattgttcagcagtcttatggcttgggggtagaagctgtaaaggagccttttggttctagacttggcattctggtaccgctttccgtgcggTAGAAGAGAAAAGTCtgtaacttgggtgactggagtctgacaattttatgggctttcctctgacactgcctattatataggtcctggatggcaggaagcttggccccagtgatgtactgggccaaacgaactaccctctgtagtgccttacggtcagatgtcgagcagttgccataccaggctgtgatgctcccgatggtgcagctctagaaccttttgaggatctggggacgcatgccaaatcttttcagtctcctgggggggaaaGGTGTTCTCATGCattcttcaagactgtcttggaCCATGATacttcgttggtgatgtggacaccaaggaacttcaaactctcgacccgctccactacagccccgtcaatgttaatgggggcctgttcggcccgccttttcctgtagtccacgatcagctcctttgtcttgctcacattgagggagaggttgctgtcatggcaccacacggccaggtctctgacctcctccctataggctgtctcatcgttgtcggtgatcaggcctaccactgttgtgtcgtcagcaatcttaatgatggtgttggagtcatgtttggccacacagtcgtgggtgaacagggagtacaggaggggactaagcacagccctgaggggccccagtgttgaggatcagcgtagcagacGCGTTGTTTCCTAACCTTACCAccgggggtggcccgtcaggaagtccaggatccagttgcagagggaggtgtttaatcccagggtccttagcgatgagctttgtgggcactatggtgttgaactctgagctgcagtcaaagaacagcattctcacataggtgttccttttgtccaggtgggaaagggtagtgtacagtagagtgcgactgagattgcgtcatcagtggatctgttggggcggtatgcgaattggagagggtctagggtatccgggaggatgctgttgagagccatgaccagtctttcaaagcacttcatggctaccaacgtgagtgctacggggcagtagtcatttaggcagctaccacatgttcttgtcaaatTCAGAGTAGCTGGCAAGCAATGAGATATGCCAAATAATCTAAAAACGacttggtcaaataaatctaattTGACCTTTCAGACAAGTCGCATGGACAGTAATCAGATTTGTATCGGATTTCAAACCACCTTCATAGAGGGTTTGAAATGTGCATTGAAACTTCcgattccatgtgctttttgaCTGTTCAGACGGCATGAAAAATAACATATTCGAATACGCAAAAAAATACGATTGGAGTCGCTTTAAACTGCCTGTGCAAACAAGGTTGAGAGTAACCCAGATGCATAAAGGCTACAGGAGTTCTTATTGTGTTGGTTTCAGTGGCCATCCCTCACCCCTAGGTAtgaaatgcagaagacacatttcagttgaatacattcagttatTCAACtcactaggtatctccctttcctgTCCCACCTGGCTTTTTAGAGTCATGTGACTGTACTCTGGTAGCTCTTGAATAAGATCTGTGGACAAAAAAAAATTGATGGAGATACgaaccagacagacagtgttATTTTATGTAAATGCTACTGATGTCCCAATAAGCGGTTGAGTTCTACGTAGATGATTTCTCTGCTCCTCTTTCTTCAAAGCcgtcatagggcggcgcacaattggcccagcgtcgtccgggttagggtttggctcgggtaggccatcattgtaaataagaatgtgttcttaactgacttgcgtagttaaataaaaggttaaaaataGTTTTGTTTTTTAAAGGTAGAAGTGTGTTTGTACCTTCTTCAACAGAGACAGATGGCAGCAGCTCTGTCTGAGTCGGAGCAATAGAGACAGGATGTGAACAGTGCTGGTGGGGCCCTGGGTCTGCTGGGAGGAGGACACAGAGTCCGCCTGGGACACTCCAAACTCACGagcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325813 lncRNA upstream 97650 65860525 ~ 65861536 (+) True G287383
TU325771 lncRNA upstream 147170 65810570 ~ 65812016 (+) True G287342
TU325763 lncRNA upstream 189625 65769192 ~ 65769561 (+) True G287334
TU325738 lncRNA upstream 202649 65756337 ~ 65756537 (+) True G287309
TU325729 lncRNA upstream 213840 65745022 ~ 65745346 (+) True G287300
TU325956 lncRNA downstream 1787 66024443 ~ 66024967 (+) True G287513
TU325961 lncRNA downstream 11764 66034420 ~ 66036202 (+) False LOC118964312
TU325963 lncRNA downstream 11764 66034420 ~ 66036202 (+) False LOC118964312
TU325988 lncRNA downstream 40477 66063133 ~ 66063367 (+) True G287530
TU325989 lncRNA downstream 41168 66063824 ~ 66064131 (+) True G287531
XM_021597727.2 mRNA upstream 145691 65777196 ~ 65813495 (+) True LOC110520417
XM_036974959.1 mRNA upstream 322100 65614185 ~ 65637086 (+) False LOC110520416
XM_036974967.1 mRNA downstream 4977 66027633 ~ 66036299 (+) False LOC118964312
XM_036974968.1 mRNA downstream 4977 66027633 ~ 66036299 (+) False LOC118964312
XM_036974969.1 mRNA downstream 4977 66027633 ~ 66036299 (+) False LOC118964312
XM_036974971.1 mRNA downstream 4977 66027633 ~ 66036299 (+) False LOC118964312
XM_036974972.1 mRNA downstream 4977 66027633 ~ 66036299 (+) False LOC118964312
TU325080 other upstream 673630 65260445 ~ 65285556 (+) True zmym2
TU325057 other upstream 792606 65161391 ~ 65166580 (+) True LOC110520396
TU325026 other upstream 849549 65109256 ~ 65109637 (+) True G286679
TU324010 other upstream 1651826 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 1875204 64071432 ~ 64083982 (+) True G285203
TU325972 other downstream 11764 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 527166 66549822 ~ 66550487 (+) True G288252
TU326969 other downstream 708630 66731286 ~ 66733797 (+) False G288430
TU327020 other downstream 760717 66783373 ~ 66784786 (+) True LOC110505407
TU327305 other downstream 970515 66993171 ~ 66994131 (+) True G288674

Expression Profile