RNA id: TU325956


Basic Information

Item Value
RNA id TU325956
length 301
lncRNA type antisense_over
GC content 0.60
exon number 3
gene id G287513
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66024443 ~ 66024967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGGATCCCTCCACAGGGTTTCTGGGTCTCTCTCCACAGCAGCCAGGCCAGAGCTCGTCTCTGATGGGCCAGTAGAGGCACCTTGATGCCTTTTGGGTCCGTAACCTCAGCATCGGGGTCGGGGCAGGACTCCAGGGAGCTGTGGAGGTGGTCAATGGCCTCAGAGGTGGCGTTCTTCACCGCTAGCAGACGGTTGTCTGTCATCCTGCCTCCATAGAACGCTTGGCTCTGGGGGTTCACTCCATACATCTGAGTGTATCCCTGGCTGAGCTGCAGCCCCATTGAGCTGGTGGAGGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325913 lncRNA upstream 1787 65959186 ~ 66022656 (+) True G287470
TU325813 lncRNA upstream 162907 65860525 ~ 65861536 (+) True G287383
TU325771 lncRNA upstream 212427 65810570 ~ 65812016 (+) True G287342
TU325763 lncRNA upstream 254882 65769192 ~ 65769561 (+) True G287334
TU325738 lncRNA upstream 267906 65756337 ~ 65756537 (+) True G287309
TU325961 lncRNA downstream 9453 66034420 ~ 66036202 (+) False LOC118964312
TU325963 lncRNA downstream 9453 66034420 ~ 66036202 (+) False LOC118964312
TU325988 lncRNA downstream 38166 66063133 ~ 66063367 (+) True G287530
TU325989 lncRNA downstream 38857 66063824 ~ 66064131 (+) True G287531
TU325992 lncRNA downstream 44361 66069328 ~ 66069643 (+) True G287534
XM_021597727.2 mRNA upstream 210948 65777196 ~ 65813495 (+) True LOC110520417
XM_036974959.1 mRNA upstream 387357 65614185 ~ 65637086 (+) False LOC110520416
XM_036974967.1 mRNA downstream 2666 66027633 ~ 66036299 (+) False LOC118964312
XM_036974968.1 mRNA downstream 2666 66027633 ~ 66036299 (+) False LOC118964312
XM_036974969.1 mRNA downstream 2666 66027633 ~ 66036299 (+) False LOC118964312
XM_036974971.1 mRNA downstream 2666 66027633 ~ 66036299 (+) False LOC118964312
XM_036974972.1 mRNA downstream 2666 66027633 ~ 66036299 (+) False LOC118964312
TU325080 other upstream 738887 65260445 ~ 65285556 (+) True zmym2
TU325057 other upstream 857863 65161391 ~ 65166580 (+) True LOC110520396
TU325026 other upstream 914806 65109256 ~ 65109637 (+) True G286679
TU324010 other upstream 1717083 64306512 ~ 64307360 (+) True G285763
TU323408 other upstream 1940461 64071432 ~ 64083982 (+) True G285203
TU325972 other downstream 9453 66034420 ~ 66036202 (+) True LOC118964312
TU326785 other downstream 524855 66549822 ~ 66550487 (+) True G288252
TU326969 other downstream 706319 66731286 ~ 66733797 (+) False G288430
TU327020 other downstream 758406 66783373 ~ 66784786 (+) True LOC110505407
TU327305 other downstream 968204 66993171 ~ 66994131 (+) True G288674

Expression Profile